{
  "total": 274,
  "topics": [
    {
      "id": 609187,
      "title": "Outcome of the 2025 Stanford RNA 3D folding challenge",
      "comment_count": 33,
      "views": 0,
      "votes": 23
    },
    {
      "id": 609196,
      "title": "Recap of Competition - Congratulations to the Winners!",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 565064,
      "title": "Welcome to the Stanford RNA 3D Folding Challenge!",
      "comment_count": 44,
      "views": 0,
      "votes": 50
    },
    {
      "id": 579687,
      "title": "Posts from the hosts",
      "comment_count": 4,
      "views": 0,
      "votes": 12
    },
    {
      "id": 565306,
      "title": "Starter notebooks by finetuning RibonanzaNet to predict 3D (updated with Rnet2 Alpha lb 0.3)",
      "comment_count": 19,
      "views": 0,
      "votes": 82
    },
    {
      "id": 564931,
      "title": "Get started here",
      "comment_count": 1,
      "views": 0,
      "votes": 12
    },
    {
      "id": 565284,
      "title": "This Competition has an Official Discord Channel",
      "comment_count": 2,
      "views": 0,
      "votes": 8
    },
    {
      "id": 666691,
      "title": "Part 2 of this competition has launched!",
      "comment_count": 1,
      "views": 0,
      "votes": 2
    },
    {
      "id": 609774,
      "title": "1st Place Solution",
      "comment_count": 26,
      "views": 0,
      "votes": 97
    },
    {
      "id": 666381,
      "title": "Virus chimie",
      "comment_count": 0,
      "views": 0,
      "votes": -1
    },
    {
      "id": 609921,
      "title": "9th place solution  - d4t4 team ",
      "comment_count": 4,
      "views": 0,
      "votes": 9
    },
    {
      "id": 613304,
      "title": "Update in LB - TBM + Protenix + Boltz",
      "comment_count": 1,
      "views": 0,
      "votes": 3
    },
    {
      "id": 580966,
      "title": "Is Usalign really equivariant under rotation and translation?",
      "comment_count": 5,
      "views": 0,
      "votes": 3
    },
    {
      "id": 610629,
      "title": "Help us discover new RNA folds in Nature",
      "comment_count": 7,
      "views": 0,
      "votes": 8
    },
    {
      "id": 610934,
      "title": "public 8th/private 32nd solution",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 609843,
      "title": "2nd Place Solution",
      "comment_count": 5,
      "views": 0,
      "votes": 16
    },
    {
      "id": 610261,
      "title": "7th Place Solution: Ensemble of Two Protenix Models",
      "comment_count": 0,
      "views": 0,
      "votes": 15
    },
    {
      "id": 609701,
      "title": "3rd Place Solution",
      "comment_count": 4,
      "views": 0,
      "votes": 16
    },
    {
      "id": 610114,
      "title": "State-of-the-RNArt",
      "comment_count": 1,
      "views": 0,
      "votes": 6
    },
    {
      "id": 609713,
      "title": "6th Place Solution ",
      "comment_count": 2,
      "views": 0,
      "votes": 13
    },
    {
      "id": 610052,
      "title": "8th solution",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 609775,
      "title": "5th Place Solution",
      "comment_count": 0,
      "views": 0,
      "votes": 9
    },
    {
      "id": 609822,
      "title": "25th Place Solution",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 609515,
      "title": "10th place solution (How we ensemble)",
      "comment_count": 2,
      "views": 0,
      "votes": 15
    },
    {
      "id": 610009,
      "title": "Newbie question: High private score but not selected for final submission",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 608277,
      "title": "Get ready for competition close!",
      "comment_count": 5,
      "views": 0,
      "votes": 16
    },
    {
      "id": 607029,
      "title": "Has any new compound been added to the dataset? ",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 604583,
      "title": "This paper may offer a solution to the chirality problem",
      "comment_count": 2,
      "views": 0,
      "votes": 1
    },
    {
      "id": 582295,
      "title": "Brief Explanation of My Temporary 1st-place Solution (Expect Significant Drop)",
      "comment_count": 19,
      "views": 0,
      "votes": 20
    },
    {
      "id": 582377,
      "title": "Description of my solution for the competition / Descripción de mi solución para la competición",
      "comment_count": 9,
      "views": 0,
      "votes": 23
    },
    {
      "id": 570292,
      "title": "AlphaFold3 baselines [0.259 noMSA/0.397 rMSA]",
      "comment_count": 29,
      "views": 0,
      "votes": 20
    },
    {
      "id": 578784,
      "title": "What's the best single-model performance we've seen on the leaderboard so far?",
      "comment_count": 12,
      "views": 0,
      "votes": 2
    },
    {
      "id": 581174,
      "title": "Discussion group for RNA folding",
      "comment_count": 6,
      "views": 0,
      "votes": 2
    },
    {
      "id": 582324,
      "title": "What happens now?",
      "comment_count": 12,
      "views": 0,
      "votes": 14
    },
    {
      "id": 588720,
      "title": "template matching is the new MSA",
      "comment_count": 0,
      "views": 0,
      "votes": 4
    },
    {
      "id": 586466,
      "title": "Can i still make submissions",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 585206,
      "title": "Newbie GNN model, I would love to have some feedback on my prediciton model.",
      "comment_count": 4,
      "views": 0,
      "votes": null
    },
    {
      "id": 584487,
      "title": "Public leaderboard 3rd place solution",
      "comment_count": 4,
      "views": 0,
      "votes": 13
    },
    {
      "id": 583502,
      "title": "Modeling human knowledge ",
      "comment_count": 1,
      "views": 0,
      "votes": 7
    },
    {
      "id": 583838,
      "title": "No solution posts?",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 582390,
      "title": "Help on imports for torch",
      "comment_count": 4,
      "views": 0,
      "votes": null
    },
    {
      "id": 582403,
      "title": "Tryhard Boltz-1 improvements",
      "comment_count": 2,
      "views": 0,
      "votes": 12
    },
    {
      "id": 582681,
      "title": "Late entry submissions?",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 580141,
      "title": "Interested in bio/AI beyond this competition?",
      "comment_count": 2,
      "views": 0,
      "votes": 12
    },
    {
      "id": 581119,
      "title": "Revolutionary RNA 3D Structure Prediction Framework",
      "comment_count": 2,
      "views": 0,
      "votes": 7
    },
    {
      "id": 581282,
      "title": "How to ensemble 3d structures?!",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 581173,
      "title": "Future availability of test sets/evaluation tools",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 581042,
      "title": "Notebook threw exception",
      "comment_count": 5,
      "views": 0,
      "votes": null
    },
    {
      "id": 579908,
      "title": "trRosettaRNA Merge Trick",
      "comment_count": 9,
      "views": 0,
      "votes": 6
    },
    {
      "id": 580433,
      "title": "Strategies for inference on long sequences",
      "comment_count": 0,
      "views": 0,
      "votes": 8
    },
    {
      "id": 579901,
      "title": "Scoring Error - Not sure what's causing it",
      "comment_count": 12,
      "views": 0,
      "votes": null
    },
    {
      "id": 580560,
      "title": "Custom Architectures From Scratch",
      "comment_count": 1,
      "views": 0,
      "votes": 1
    },
    {
      "id": 580206,
      "title": "Ensemble of solutions",
      "comment_count": 3,
      "views": 0,
      "votes": 3
    },
    {
      "id": 579929,
      "title": "Submission time",
      "comment_count": 9,
      "views": 0,
      "votes": 3
    },
    {
      "id": 579166,
      "title": "Regarding future notebook execution time limits",
      "comment_count": 7,
      "views": 0,
      "votes": 1
    },
    {
      "id": 579319,
      "title": "As a newbie, why do I get different scores even though I have fixed the seed and submitted the same code and submission.csv every time?",
      "comment_count": 8,
      "views": 0,
      "votes": 1
    },
    {
      "id": 580294,
      "title": "Clarification on the correct test data path",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 578187,
      "title": "Getting Started with This Competition ",
      "comment_count": 3,
      "views": 0,
      "votes": 30
    },
    {
      "id": 580162,
      "title": "What is the maximum sequence length (in bases) that Protenix can handle within the memory constraints of the Kaggle environment?",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 579657,
      "title": "Too much Randomness? Indicative of a Shakeup? ",
      "comment_count": 11,
      "views": 0,
      "votes": 1
    },
    {
      "id": 579875,
      "title": "Implementation of the Eval Metric",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 579181,
      "title": "Does the Scoring for submission executed on another hidden set as well as the public test set?",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 579732,
      "title": "Confusion about V2",
      "comment_count": 2,
      "views": 0,
      "votes": 2
    },
    {
      "id": 579844,
      "title": "Clarification on Non-Standard Characters (\"X\" and \"-\") in RNA Sequences",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 579240,
      "title": "Eternafold in code, conda?",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 577872,
      "title": "How to get CASP 15 dataset?",
      "comment_count": 3,
      "views": 0,
      "votes": 1
    },
    {
      "id": 578548,
      "title": "MSAs for the train_v2 dataset",
      "comment_count": 2,
      "views": 0,
      "votes": 8
    },
    {
      "id": 578858,
      "title": "PDB_RNA in competition data",
      "comment_count": 0,
      "views": 0,
      "votes": 5
    },
    {
      "id": 579235,
      "title": "Local TM Score seems to be different from the Submission Scoring ",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 578836,
      "title": "Data API download is broken",
      "comment_count": 3,
      "views": 0,
      "votes": 2
    },
    {
      "id": 573495,
      "title": "ProteinX finetune result and code",
      "comment_count": 29,
      "views": 0,
      "votes": 32
    },
    {
      "id": 575226,
      "title": "To Protenix Finetuners",
      "comment_count": 13,
      "views": 0,
      "votes": null
    },
    {
      "id": 578927,
      "title": "create notbook option is not visible",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 578396,
      "title": "Submission issues",
      "comment_count": 7,
      "views": 0,
      "votes": 1
    },
    {
      "id": 578554,
      "title": "will submission process stay open after the competition has closed? ",
      "comment_count": 1,
      "views": 0,
      "votes": 1
    },
    {
      "id": 578600,
      "title": "How to handle multiple datasets and get insights from multiple datasets to train a model.",
      "comment_count": 0,
      "views": 0,
      "votes": -1
    },
    {
      "id": 578594,
      "title": "OpenSource ecoSystem Drug-Discovery-Aptamers.",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 578558,
      "title": "Notebook Threw Exception",
      "comment_count": 1,
      "views": 0,
      "votes": -1
    },
    {
      "id": 576619,
      "title": "RNA 3D Folding Prediction with Boltz-1 🧬",
      "comment_count": 9,
      "views": 0,
      "votes": 21
    },
    {
      "id": 576526,
      "title": "Nvidia co-hosts!",
      "comment_count": 9,
      "views": 0,
      "votes": 14
    },
    {
      "id": 576742,
      "title": "Considerations for Ensembling in RNA 3D Structure Prediction",
      "comment_count": 0,
      "views": 0,
      "votes": 14
    },
    {
      "id": 573780,
      "title": "Why dimensions are very crucial ",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 577878,
      "title": "Publication round up",
      "comment_count": 1,
      "views": 0,
      "votes": 6
    },
    {
      "id": 575109,
      "title": "Training data update",
      "comment_count": 27,
      "views": 0,
      "votes": 13
    },
    {
      "id": 578421,
      "title": "How is the current public LB determined?",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 578350,
      "title": "How to handle missing data?",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 578148,
      "title": "fine-tuning model mystery",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 576556,
      "title": "All known RNA 3D structures clustered by sequence and structural similarity",
      "comment_count": 0,
      "views": 0,
      "votes": 10
    },
    {
      "id": 578149,
      "title": "Anyway to use flash-attention 2 in kaggle notebooks?",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 576522,
      "title": "Another paper looking at RNA structure prediction",
      "comment_count": 0,
      "views": 0,
      "votes": 7
    },
    {
      "id": 576766,
      "title": "Why do you consider the same sequence as different target ids?",
      "comment_count": 2,
      "views": 0,
      "votes": 1
    },
    {
      "id": 574214,
      "title": "Potential Approaches & Ideas",
      "comment_count": 6,
      "views": 0,
      "votes": 9
    },
    {
      "id": 577961,
      "title": "Summary audio from NotebookLM",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 577781,
      "title": "Any recommendation on long RNA sequence using RibonanzaNet.",
      "comment_count": 1,
      "views": 0,
      "votes": 1
    },
    {
      "id": 568445,
      "title": "A medium-level introduction to RNA folding, part 1",
      "comment_count": 19,
      "views": 0,
      "votes": 80
    },
    {
      "id": 576462,
      "title": "What is the TM-score of the single trained Protenix  Model?",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 568633,
      "title": "Introduction to RNA folding, part 2",
      "comment_count": 9,
      "views": 0,
      "votes": 56
    },
    {
      "id": 576297,
      "title": "Submission's timeline",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 576171,
      "title": "Why biopython cannot be used successfully offline?",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 566906,
      "title": "[placeholder lb0.321/0.500] My solution and experimental results",
      "comment_count": 107,
      "views": 0,
      "votes": 121
    },
    {
      "id": 575099,
      "title": " Early Sharing Prizes are now open",
      "comment_count": 5,
      "views": 0,
      "votes": 3
    },
    {
      "id": 576038,
      "title": "Working with large sequence RNA almost fried my GPU and CPU!",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 575977,
      "title": "Quaternary Structures",
      "comment_count": 2,
      "views": 0,
      "votes": 0
    },
    {
      "id": 575745,
      "title": "Questions Regarding the Hidden Test Set for Final Evaluation",
      "comment_count": 4,
      "views": 0,
      "votes": 1
    },
    {
      "id": 575223,
      "title": "update from ICLR 2025",
      "comment_count": 3,
      "views": 0,
      "votes": 12
    },
    {
      "id": 568125,
      "title": "[draft] example to use MAS provided: case of rhofold+",
      "comment_count": 22,
      "views": 0,
      "votes": 16
    },
    {
      "id": 575797,
      "title": "The prediction results for the main chain atom (P) are missing.",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 575910,
      "title": "How much time would it take to submit?",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 575448,
      "title": "Best way to deal with long sequences",
      "comment_count": 1,
      "views": 0,
      "votes": 5
    },
    {
      "id": 575485,
      "title": "What defines the origin (0,0,0) for the protein structure?",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 574913,
      "title": "Submission Re-Enabled (PLEASE READ)",
      "comment_count": 33,
      "views": 0,
      "votes": 4
    },
    {
      "id": 575334,
      "title": "Notebook format issue submission failed!",
      "comment_count": 5,
      "views": 0,
      "votes": null
    },
    {
      "id": 575408,
      "title": "Test data looks the same",
      "comment_count": 3,
      "views": 0,
      "votes": 1
    },
    {
      "id": 575267,
      "title": "Using ViennaRNA base-pairing information",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 575358,
      "title": "not able to map the sequence to numeric data it take to much resouce ",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 568116,
      "title": "Multiple Sequence Alignments (MSAs) for Targets",
      "comment_count": 10,
      "views": 0,
      "votes": 20
    },
    {
      "id": 575210,
      "title": "Submission failed biopython",
      "comment_count": 6,
      "views": 0,
      "votes": null
    },
    {
      "id": 575238,
      "title": "Submission CSV Not Found",
      "comment_count": 6,
      "views": 0,
      "votes": null
    },
    {
      "id": 575078,
      "title": "submission scoring error when trying to resubmit ",
      "comment_count": 9,
      "views": 0,
      "votes": null
    },
    {
      "id": 574645,
      "title": "Submission Freeze April 23",
      "comment_count": 7,
      "views": 0,
      "votes": 9
    },
    {
      "id": 574479,
      "title": "TOP1 changed again",
      "comment_count": 10,
      "views": 0,
      "votes": null
    },
    {
      "id": 575230,
      "title": "Out of memory error for submission scoring process issue",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 572850,
      "title": " 🧬 Why RNA 3D Structure Prediction is Hard — And How We're Tackling It",
      "comment_count": 4,
      "views": 0,
      "votes": 3
    },
    {
      "id": 575137,
      "title": "About Temporal Cutoff",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 575158,
      "title": "Time Complexity Analysis for RNA Sequence Processing",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 575141,
      "title": "Who would like to build a team?",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 574953,
      "title": "What happened to the leaderboard?",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 574019,
      "title": "Where Can Directly Download rMSA Search Results for RNA Data from wwPDB?",
      "comment_count": 1,
      "views": 0,
      "votes": 4
    },
    {
      "id": 573485,
      "title": "How are you doing error analysis?",
      "comment_count": 1,
      "views": 0,
      "votes": 4
    },
    {
      "id": 565292,
      "title": "Starting materials and references",
      "comment_count": 11,
      "views": 0,
      "votes": 42
    },
    {
      "id": 574435,
      "title": "has anyone used Boltz-1 yet,  if yes what are your experiences  ",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 565374,
      "title": "Is there any chance of releasing the scoring code? (aligning+scoring)",
      "comment_count": 12,
      "views": 0,
      "votes": 21
    },
    {
      "id": 574085,
      "title": "submission.csv file not found",
      "comment_count": 2,
      "views": 0,
      "votes": 2
    },
    {
      "id": 574333,
      "title": "About Protenix",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 574224,
      "title": "[Newbie Question] Clarification on GPU Time Limit and Inference",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 574050,
      "title": "New paper: Generating the polymorph landscapes of amyloid fibrils using AI: RibbonFold",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 574188,
      "title": "Issues Regarding EDA and Feature Extraction/Engineering",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 571661,
      "title": "Protenix inference | LB score of 0.33",
      "comment_count": 3,
      "views": 0,
      "votes": 11
    },
    {
      "id": 574027,
      "title": "Surprised to see someone beat the vfold baseline",
      "comment_count": 3,
      "views": 0,
      "votes": 0
    },
    {
      "id": 573804,
      "title": "Coming soon: Data Refresh & Early Sharing Prize",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 571704,
      "title": "RibonanzaNet2 alpha release",
      "comment_count": 10,
      "views": 0,
      "votes": 40
    },
    {
      "id": 573317,
      "title": "Training labels / Multiple conformations",
      "comment_count": 1,
      "views": 0,
      "votes": 4
    },
    {
      "id": 569666,
      "title": "LB probing results in Stanford RNA 3D Folding",
      "comment_count": 3,
      "views": 0,
      "votes": 6
    },
    {
      "id": 573633,
      "title": "How can we combine multiple predicted RNA 3D structures (e.g., 5 predictions) to find an optimal or consensus structure?",
      "comment_count": 4,
      "views": 0,
      "votes": null
    },
    {
      "id": 573410,
      "title": "Differences between ribonanzanet v2 and alphafold3/protenix",
      "comment_count": 1,
      "views": 0,
      "votes": 2
    },
    {
      "id": 573580,
      "title": "Synthesis data",
      "comment_count": 5,
      "views": 0,
      "votes": null
    },
    {
      "id": 573102,
      "title": "New article assessing RNA structure predictions with AlphaFold models",
      "comment_count": 0,
      "views": 0,
      "votes": 6
    },
    {
      "id": 567046,
      "title": "Good starter pack for Stanford RNA 3D Folding Contest - 2025",
      "comment_count": 1,
      "views": 0,
      "votes": 21
    },
    {
      "id": 573097,
      "title": "[Regarding the Reliability of Training Data]❓ Here is critical case that induce no pair feature. ",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 572763,
      "title": "Submission Scoring Error",
      "comment_count": 3,
      "views": 0,
      "votes": 1
    },
    {
      "id": 568066,
      "title": "a new paper : Drfold2 :  NO MSA required",
      "comment_count": 6,
      "views": 0,
      "votes": 28
    },
    {
      "id": 573058,
      "title": "Is submission time too long today?",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 570704,
      "title": "[draft] how to finetune proteinx (AF3 clone) for MSA RNA finetunning",
      "comment_count": 8,
      "views": 0,
      "votes": 21
    },
    {
      "id": 572962,
      "title": "Prize money redistribution - competition host",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 571812,
      "title": "🧬 RNA 3D Structure Prediction: 10 Key Terms Every Beginner Should Know",
      "comment_count": 1,
      "views": 0,
      "votes": 13
    },
    {
      "id": 572096,
      "title": "Clarification on Early Sharing Prize and Temporal Cutoff Rule",
      "comment_count": 16,
      "views": 0,
      "votes": 5
    },
    {
      "id": 572716,
      "title": "Anyone could advise for scoring failed ? :(",
      "comment_count": 1,
      "views": 0,
      "votes": 1
    },
    {
      "id": 568802,
      "title": "Using Local Training and test_sequence for Inference Submission",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 571261,
      "title": "Clarification Request: Missing Biological Assembly Data",
      "comment_count": 8,
      "views": 0,
      "votes": 6
    },
    {
      "id": 569085,
      "title": "Competition data processing pipeline",
      "comment_count": 10,
      "views": 0,
      "votes": 38
    },
    {
      "id": 572353,
      "title": "Calculate TM-score accurately",
      "comment_count": 4,
      "views": 0,
      "votes": 1
    },
    {
      "id": 571121,
      "title": "Why scoring failed for my notebook",
      "comment_count": 7,
      "views": 0,
      "votes": 2
    },
    {
      "id": 571029,
      "title": "coordinate origin",
      "comment_count": 4,
      "views": 0,
      "votes": 3
    },
    {
      "id": 568708,
      "title": "Need clarification on early sharing prize",
      "comment_count": 4,
      "views": 0,
      "votes": 1
    },
    {
      "id": 571324,
      "title": "Question on RNA structure variability and 40-ground-truth consideration",
      "comment_count": 6,
      "views": 0,
      "votes": 6
    },
    {
      "id": 571473,
      "title": "A paper that compares 6 rna 3d structure prediction methods ",
      "comment_count": 2,
      "views": 0,
      "votes": 5
    },
    {
      "id": 570338,
      "title": "How is Mirror Symmetry Handled in the PDB Database?",
      "comment_count": 4,
      "views": 0,
      "votes": 2
    },
    {
      "id": 568823,
      "title": "Alphafold3 alternatives",
      "comment_count": 3,
      "views": 0,
      "votes": 1
    },
    {
      "id": 571092,
      "title": "DRfold model weights dataset created",
      "comment_count": 0,
      "views": 0,
      "votes": 7
    },
    {
      "id": 568747,
      "title": "Submission Scoring Error – Incorrect Format Despite Matching Sample Submission",
      "comment_count": 4,
      "views": 0,
      "votes": 3
    },
    {
      "id": 570768,
      "title": "New editorial on RNA structure prediction with links to papers ",
      "comment_count": 0,
      "views": 0,
      "votes": 9
    },
    {
      "id": 569507,
      "title": "Anyone ran Vfold Pipeline locally?",
      "comment_count": 12,
      "views": 0,
      "votes": null
    },
    {
      "id": 570742,
      "title": "Mol*: Powerful & Fast 3D Visualization Tool",
      "comment_count": 0,
      "views": 0,
      "votes": 9
    },
    {
      "id": 571383,
      "title": "Explored various architectures but still the leaderboard score doesn't change",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 565831,
      "title": "NaN values in train labels set",
      "comment_count": 11,
      "views": 0,
      "votes": 9
    },
    {
      "id": 570598,
      "title": "OpenComplex: An AF2-Based Model for RNA and RNA–Protein Structure Prediction",
      "comment_count": 5,
      "views": 0,
      "votes": 7
    },
    {
      "id": 570508,
      "title": "🧬 Estimating Covarying Base Pairs Based on MSA",
      "comment_count": 4,
      "views": 0,
      "votes": 8
    },
    {
      "id": 570231,
      "title": "What is the discrepancy of temporal_cutoff between validation.csv and PDB database?",
      "comment_count": 2,
      "views": 0,
      "votes": 2
    },
    {
      "id": 570349,
      "title": "Some useful information if you are using NuFold",
      "comment_count": 6,
      "views": 0,
      "votes": 10
    },
    {
      "id": 570131,
      "title": "Got a cool dataset – sharing here!",
      "comment_count": 3,
      "views": 0,
      "votes": 12
    },
    {
      "id": 570380,
      "title": "Interactive Visualization of Protein Structures with py3Dmol",
      "comment_count": 0,
      "views": 0,
      "votes": 8
    },
    {
      "id": 568232,
      "title": "A Gentle introduction to the problem statement for absolute beginners.",
      "comment_count": 14,
      "views": 0,
      "votes": 23
    },
    {
      "id": 569727,
      "title": "3' and 5' Ends",
      "comment_count": 9,
      "views": 0,
      "votes": 5
    },
    {
      "id": 569424,
      "title": "MSA Update",
      "comment_count": 23,
      "views": 0,
      "votes": 17
    },
    {
      "id": 569502,
      "title": "Why only 844 sequences and ideas about more data",
      "comment_count": 5,
      "views": 0,
      "votes": 15
    },
    {
      "id": 565500,
      "title": "Protein Structure Prediction - 2024 Chemistry Nobel",
      "comment_count": 1,
      "views": 0,
      "votes": 9
    },
    {
      "id": 570003,
      "title": "Paper: MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training",
      "comment_count": 1,
      "views": 0,
      "votes": 6
    },
    {
      "id": 570215,
      "title": "Latest review for predict 3D structures of RNA ",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 569915,
      "title": "Third week competition learning journey + next week path",
      "comment_count": 7,
      "views": 0,
      "votes": 3
    },
    {
      "id": 569982,
      "title": "bfloat16 for alpha3 clone proteinx",
      "comment_count": 2,
      "views": 0,
      "votes": 3
    },
    {
      "id": 570179,
      "title": "How do we ensemble models to outscore predictions generated by single model?",
      "comment_count": 3,
      "views": 0,
      "votes": 2
    },
    {
      "id": 569430,
      "title": "Biological definition of the dataset",
      "comment_count": 1,
      "views": 0,
      "votes": 9
    },
    {
      "id": 568946,
      "title": "hot cake of GTC25: is DGX spark going to change kaggle competition?",
      "comment_count": 2,
      "views": 0,
      "votes": 13
    },
    {
      "id": 567959,
      "title": "Convert UW synthetic dataset of 440k synthetic RNAs",
      "comment_count": 10,
      "views": 0,
      "votes": 20
    },
    {
      "id": 565426,
      "title": "Step 1 : Literature Review - Related Research Papers",
      "comment_count": 3,
      "views": 0,
      "votes": 21
    },
    {
      "id": 568512,
      "title": "[Draft] RNA 3d structure via minizing energy for fape(Frame Aligned Point Error) and base-pairing",
      "comment_count": 10,
      "views": 0,
      "votes": 20
    },
    {
      "id": 569970,
      "title": "Are test monomers all coming from a single-chain structure?",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 570169,
      "title": "Does it make sense to train using the training set?",
      "comment_count": 1,
      "views": 0,
      "votes": 1
    },
    {
      "id": 565279,
      "title": "You should check this video from Veritasium",
      "comment_count": 13,
      "views": 0,
      "votes": 59
    },
    {
      "id": 569703,
      "title": "How can we run AlphaFold 3 on Kaggle? (Link provided)",
      "comment_count": 8,
      "views": 0,
      "votes": 1
    },
    {
      "id": 569322,
      "title": "RibonanzaNet 3D finetuning with a structure module lb 0.19",
      "comment_count": 2,
      "views": 0,
      "votes": 9
    },
    {
      "id": 569687,
      "title": "Questions about temporal cutoff",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 569164,
      "title": "Understanding MSA files ",
      "comment_count": 6,
      "views": 0,
      "votes": 3
    },
    {
      "id": 568123,
      "title": "RibonanzaNet Explained",
      "comment_count": 3,
      "views": 0,
      "votes": 16
    },
    {
      "id": 569668,
      "title": "How long is the inference time per RNA?",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 569257,
      "title": "RhoFold+ Explained by AI Video walkthrough",
      "comment_count": 2,
      "views": 0,
      "votes": 4
    },
    {
      "id": 568039,
      "title": "Starter Notebooks: Uploading New Models for Inference",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 565314,
      "title": "Naive question: Is this feasible with Kaggle resources?",
      "comment_count": 6,
      "views": 0,
      "votes": 18
    },
    {
      "id": 565786,
      "title": "Need Tips as a Newbie",
      "comment_count": 6,
      "views": 0,
      "votes": 14
    },
    {
      "id": 568144,
      "title": "How to solve \"Notebook out of disk\" error while scoring?",
      "comment_count": 8,
      "views": 0,
      "votes": 0
    },
    {
      "id": 568895,
      "title": "Beginner’s Implementation - Drfold and Submission",
      "comment_count": 1,
      "views": 0,
      "votes": 4
    },
    {
      "id": 569070,
      "title": "Confused about validation strategy",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 568763,
      "title": "Missing segments of structurally unresolved residues in train data",
      "comment_count": 2,
      "views": 0,
      "votes": 1
    },
    {
      "id": 568825,
      "title": "Data in PDB format?",
      "comment_count": 3,
      "views": 0,
      "votes": 2
    },
    {
      "id": 568931,
      "title": "Exploring RNA Structure & Folding – Let's Discuss!",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 566583,
      "title": "Clarification on RNA Lengths",
      "comment_count": 2,
      "views": 0,
      "votes": 2
    },
    {
      "id": 567188,
      "title": "About the data",
      "comment_count": 6,
      "views": 0,
      "votes": 6
    },
    {
      "id": 568878,
      "title": "PDB file for custom residues sequence?",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 565804,
      "title": "Do submission with GPU P100?",
      "comment_count": 2,
      "views": 0,
      "votes": 1
    },
    {
      "id": 568042,
      "title": "Understanding the Problem Statement",
      "comment_count": 1,
      "views": 0,
      "votes": 11
    },
    {
      "id": 568737,
      "title": "trRosettaRNA's dataset",
      "comment_count": 2,
      "views": 0,
      "votes": 1
    },
    {
      "id": 568794,
      "title": "Temporal Cutoff and Data Leak",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 568743,
      "title": "Why temporal cutoff and not normal train test split",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 567990,
      "title": "Key Findings from EDA",
      "comment_count": 0,
      "views": 0,
      "votes": 13
    },
    {
      "id": 566534,
      "title": "paper: Has AlphaFold 3 reached its success for RNAs?",
      "comment_count": 4,
      "views": 0,
      "votes": 29
    },
    {
      "id": 568642,
      "title": "I need a teammate",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 568059,
      "title": "Early Sharing Prize clarification",
      "comment_count": 4,
      "views": 0,
      "votes": 5
    },
    {
      "id": 568012,
      "title": "Previous Kaggle Competitions and Winning Solutions",
      "comment_count": 0,
      "views": 0,
      "votes": 8
    },
    {
      "id": 567821,
      "title": "Is Multiple Sequence Alignment (MSA) Essential?",
      "comment_count": 7,
      "views": 0,
      "votes": 3
    },
    {
      "id": 568298,
      "title": "About 'OOM' Issue",
      "comment_count": 3,
      "views": 0,
      "votes": null
    },
    {
      "id": 568383,
      "title": "tm_score scoring function changes shape of submission df",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 568379,
      "title": "TM score Lalign",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 568087,
      "title": "Internal coordinates",
      "comment_count": 3,
      "views": 0,
      "votes": 2
    },
    {
      "id": 568438,
      "title": "Torch Template Iteration for Stanford RNA 3D Folding",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 566463,
      "title": "Basics To Understand the Competition",
      "comment_count": 10,
      "views": 0,
      "votes": 7
    },
    {
      "id": 568102,
      "title": "submission take llooooooong time !!!",
      "comment_count": 3,
      "views": 0,
      "votes": 1
    },
    {
      "id": 567539,
      "title": "Synthetic RNA structure dataset",
      "comment_count": 0,
      "views": 0,
      "votes": 15
    },
    {
      "id": 567262,
      "title": "kaggle evaluation code: per rna or per rna chain?",
      "comment_count": 6,
      "views": 0,
      "votes": 11
    },
    {
      "id": 566854,
      "title": "Clarification on Dataset Terminology",
      "comment_count": 2,
      "views": 0,
      "votes": 5
    },
    {
      "id": 568220,
      "title": "TM Score - Is the Usalign executable of the notebook modified ?",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 567825,
      "title": "Replicate TM Score locally",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 567621,
      "title": "Number of ways to fold",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 567587,
      "title": "Insights of a training pipeline for RNA 3D Folding prediction",
      "comment_count": 4,
      "views": 0,
      "votes": null
    },
    {
      "id": 566334,
      "title": "Beginners guide RNA 3D Folding: starting to submission",
      "comment_count": 5,
      "views": 0,
      "votes": 9
    },
    {
      "id": 567861,
      "title": "Submission Failed",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 567735,
      "title": "Very Short RNA Sequences",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 567502,
      "title": "NA loss during finetuning with max length of 1024?",
      "comment_count": 5,
      "views": 0,
      "votes": null
    },
    {
      "id": 566875,
      "title": "I am little confused with 5 predictions",
      "comment_count": 6,
      "views": 0,
      "votes": 6
    },
    {
      "id": 567374,
      "title": "First week RNA 3D folding Learning +  Second week plan",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 565826,
      "title": "Validation/Test sequence sets are the same. Why?",
      "comment_count": 1,
      "views": 0,
      "votes": 3
    },
    {
      "id": 566910,
      "title": "Need to Innovate on Position Encoding Techniques",
      "comment_count": 0,
      "views": 0,
      "votes": 8
    },
    {
      "id": 567388,
      "title": "Dumb Question: Do we split the train data?",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 567354,
      "title": "How do I submit a notebook?",
      "comment_count": 2,
      "views": 0,
      "votes": -1
    },
    {
      "id": 567304,
      "title": "RNA nucleotide sequence position in 3D",
      "comment_count": 1,
      "views": 0,
      "votes": null
    },
    {
      "id": 566792,
      "title": "typo error in computation of tm score in overview page",
      "comment_count": 2,
      "views": 0,
      "votes": 3
    },
    {
      "id": 566232,
      "title": "how to handle different rna conformational states in pdb training data?",
      "comment_count": 3,
      "views": 0,
      "votes": 5
    },
    {
      "id": 566208,
      "title": "Suggestions for My GCN Approach in Stanford RNA 3D Folding?",
      "comment_count": 3,
      "views": 0,
      "votes": 6
    },
    {
      "id": 566805,
      "title": "2nd Day challenge: Learning about RNA secondary structures",
      "comment_count": 1,
      "views": 0,
      "votes": 2
    },
    {
      "id": 567025,
      "title": "3rd day: DataLoaders and padding",
      "comment_count": 0,
      "views": 0,
      "votes": 1
    },
    {
      "id": 566794,
      "title": "Fine-tune a pre-trained model for RNA 3D Folding with MultiMolecule",
      "comment_count": 0,
      "views": 0,
      "votes": 2
    },
    {
      "id": 566581,
      "title": "Using Deepseek created Kaggle competition analyst as Kaggle AI model reuse it and learning materials also shared",
      "comment_count": 0,
      "views": 0,
      "votes": 3
    },
    {
      "id": 566889,
      "title": "CODON Clarification required, Please Help",
      "comment_count": 2,
      "views": 0,
      "votes": null
    },
    {
      "id": 566056,
      "title": "US-align process",
      "comment_count": 3,
      "views": 0,
      "votes": 3
    },
    {
      "id": 566765,
      "title": "Looking team members for participating in this competition",
      "comment_count": 0,
      "views": 0,
      "votes": 0
    },
    {
      "id": 565715,
      "title": "Are context chains being considered?",
      "comment_count": 2,
      "views": 0,
      "votes": 11
    },
    {
      "id": 565746,
      "title": "`validation_labels.csv`: should -1e+18 be interpreted as NaN?",
      "comment_count": 3,
      "views": 0,
      "votes": 9
    },
    {
      "id": 566535,
      "title": "d_0 for L_ref < 15",
      "comment_count": 0,
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