{
  "id": 575267,
  "title": "Using ViennaRNA base-pairing information",
  "url": "/competitions/stanford-rna-3d-folding/discussion/575267",
  "author_name": "",
  "post_date": "2025-04-27T10:15:31.057222800Z",
  "votes": null,
  "comment_count": 1,
  "views": 0,
  "content": "<p>Hi all, </p>\n<p>Can we use the ViennaRNA engine for extracting base-pairing information between the nucleotides during competition submission? Since the internet is disabled, I think we cannot install the related dependencies, so is there any way to use it (especially considering the test sequences for which we cannot do this extraction offline) ?</p>\n<p>Thanks</p>",
  "messages": [
    {
      "id": "3188273",
      "postDate": "04/27/2025 10:15:31",
      "content": "<p>Hi all, </p>\n<p>Can we use the ViennaRNA engine for extracting base-pairing information between the nucleotides during competition submission? Since the internet is disabled, I think we cannot install the related dependencies, so is there any way to use it (especially considering the test sequences for which we cannot do this extraction offline) ?</p>\n<p>Thanks</p>",
      "rawMarkdown": "Hi all, \n\nCan we use the ViennaRNA engine for extracting base-pairing information between the nucleotides during competition submission? Since the internet is disabled, I think we cannot install the related dependencies, so is there any way to use it (especially considering the test sequences for which we cannot do this extraction offline) ?\n\nThanks",
      "votes": null
    },
    {
      "id": "3188470",
      "postDate": "04/27/2025 16:39:22",
      "content": "<p>If you are refering to install dependencies via pip, you can use Kaggle's dependency manager. You'll need internet to use it in interactive environment but when you save the notebook, you can turn off Internet and it will still work.<br>\n<img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F10897974%2F5bdcb503c376bf6a032bc1bcc14f653c%2FScreenshot%202025-04-27%20at%2023.38.51.png?generation=1745771959158701&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "If you are refering to install dependencies via pip, you can use Kaggle's dependency manager. You'll need internet to use it in interactive environment but when you save the notebook, you can turn off Internet and it will still work.\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F10897974%2F5bdcb503c376bf6a032bc1bcc14f653c%2FScreenshot%202025-04-27%20at%2023.38.51.png?generation=1745771959158701&alt=media)",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 3188470,
      "author_name": "longnguyenthanh112",
      "author_url": "",
      "post_date": "04/27/2025 16:39:22",
      "content": "<p>If you are refering to install dependencies via pip, you can use Kaggle's dependency manager. You'll need internet to use it in interactive environment but when you save the notebook, you can turn off Internet and it will still work.<br>\n<img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F10897974%2F5bdcb503c376bf6a032bc1bcc14f653c%2FScreenshot%202025-04-27%20at%2023.38.51.png?generation=1745771959158701&amp;alt=media\" alt=\"\"></p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "3188273": "Hi all, \n\nCan we use the ViennaRNA engine for extracting base-pairing information between the nucleotides during competition submission? Since the internet is disabled, I think we cannot install the related dependencies, so is there any way to use it (especially considering the test sequences for which we cannot do this extraction offline) ?\n\nThanks",
    "3188470": "If you are refering to install dependencies via pip, you can use Kaggle's dependency manager. You'll need internet to use it in interactive environment but when you save the notebook, you can turn off Internet and it will still work.\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F10897974%2F5bdcb503c376bf6a032bc1bcc14f653c%2FScreenshot%202025-04-27%20at%2023.38.51.png?generation=1745771959158701&alt=media)"
  },
  "source": "meta"
}