{
  "id": 572353,
  "title": "Calculate TM-score accurately",
  "url": "/competitions/stanford-rna-3d-folding/discussion/572353",
  "author_name": "",
  "post_date": "2025-04-09T05:43:51.108425500Z",
  "votes": 1,
  "comment_count": 4,
  "views": 0,
  "content": "<p>How can I obtain a reliable TM-score?<br>\nI have tried various methods for TM-score calculation, including using US-align, but I found that the TM-score can vary significantly depending on the specific evaluation method used — even for the same predicted structure.<br>\nHow did you handle this issue in your own work?</p>",
  "messages": [
    {
      "id": "3174446",
      "postDate": "04/09/2025 05:43:51",
      "content": "<p>How can I obtain a reliable TM-score?<br>\nI have tried various methods for TM-score calculation, including using US-align, but I found that the TM-score can vary significantly depending on the specific evaluation method used — even for the same predicted structure.<br>\nHow did you handle this issue in your own work?</p>",
      "rawMarkdown": "How can I obtain a reliable TM-score?\nI have tried various methods for TM-score calculation, including using US-align, but I found that the TM-score can vary significantly depending on the specific evaluation method used — even for the same predicted structure.\nHow did you handle this issue in your own work?",
      "votes": null
    },
    {
      "id": "3174581",
      "postDate": "04/09/2025 08:26:54",
      "content": "<p>I already analysis and calculated many time and test, can you reference this to help you. Any question go ahead to discuss<br>\n<a href=\"https://www.kaggle.com/code/dedquoc/rna-3d-evaluation-submission\" target=\"_blank\">https://www.kaggle.com/code/dedquoc/rna-3d-evaluation-submission</a></p>",
      "rawMarkdown": "I already analysis and calculated many time and test, can you reference this to help you. Any question go ahead to discuss\nhttps://www.kaggle.com/code/dedquoc/rna-3d-evaluation-submission",
      "votes": null
    },
    {
      "id": "3174841",
      "postDate": "04/09/2025 13:44:00",
      "content": "<p>I use the TM score provided by the competition host: <a href=\"https://www.kaggle.com/code/metric/ribonanza-tm-score\" target=\"_blank\">https://www.kaggle.com/code/metric/ribonanza-tm-score</a></p>",
      "rawMarkdown": "I use the TM score provided by the competition host: https://www.kaggle.com/code/metric/ribonanza-tm-score",
      "votes": null
    },
    {
      "id": "3174853",
      "postDate": "04/09/2025 13:50:47",
      "content": "<p>Thank you! I was wondering why lb score(0.32)  is too much different compared to publix test score(0.41) on protenix model.</p>",
      "rawMarkdown": "Thank you! I was wondering why lb score(0.32)  is too much different compared to publix test score(0.41) on protenix model.",
      "votes": null
    },
    {
      "id": "3174856",
      "postDate": "04/09/2025 13:53:01",
      "content": "<p>And I used the link that you give me too…</p>",
      "rawMarkdown": "And I used the link that you give me too…",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 3174581,
      "author_name": "dedquoc",
      "author_url": "",
      "post_date": "04/09/2025 08:26:54",
      "content": "<p>I already analysis and calculated many time and test, can you reference this to help you. Any question go ahead to discuss<br>\n<a href=\"https://www.kaggle.com/code/dedquoc/rna-3d-evaluation-submission\" target=\"_blank\">https://www.kaggle.com/code/dedquoc/rna-3d-evaluation-submission</a></p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 3174841,
      "author_name": "nguyenhoa",
      "author_url": "",
      "post_date": "04/09/2025 13:44:00",
      "content": "<p>I use the TM score provided by the competition host: <a href=\"https://www.kaggle.com/code/metric/ribonanza-tm-score\" target=\"_blank\">https://www.kaggle.com/code/metric/ribonanza-tm-score</a></p>",
      "votes": null,
      "replies": [
        {
          "id": 3174853,
          "author_name": "doheon114",
          "author_url": "",
          "post_date": "04/09/2025 13:50:47",
          "content": "<p>Thank you! I was wondering why lb score(0.32)  is too much different compared to publix test score(0.41) on protenix model.</p>",
          "votes": null,
          "replies": [
            {
              "id": 3174856,
              "author_name": "doheon114",
              "author_url": "",
              "post_date": "04/09/2025 13:53:01",
              "content": "<p>And I used the link that you give me too…</p>",
              "votes": null,
              "replies": []
            }
          ]
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "3174446": "How can I obtain a reliable TM-score?\nI have tried various methods for TM-score calculation, including using US-align, but I found that the TM-score can vary significantly depending on the specific evaluation method used — even for the same predicted structure.\nHow did you handle this issue in your own work?",
    "3174581": "I already analysis and calculated many time and test, can you reference this to help you. Any question go ahead to discuss\nhttps://www.kaggle.com/code/dedquoc/rna-3d-evaluation-submission",
    "3174841": "I use the TM score provided by the competition host: https://www.kaggle.com/code/metric/ribonanza-tm-score",
    "3174853": "Thank you! I was wondering why lb score(0.32)  is too much different compared to publix test score(0.41) on protenix model.",
    "3174856": "And I used the link that you give me too…"
  },
  "source": "meta"
}