{
  "id": 570380,
  "title": "Interactive Visualization of Protein Structures with py3Dmol",
  "url": "/competitions/stanford-rna-3d-folding/discussion/570380",
  "author_name": "Bilzard",
  "post_date": "2025-03-27T12:28:33.463000",
  "votes": 8,
  "comment_count": 0,
  "views": 0,
  "content": "<p>This demo lets you view 3D molecular structures from PDB files right in your browser, using a Python tool called py3Dmol [1]. It's useful for checking both known and predicted structures in an interactive way.</p>\n<p>notebook:<br>\n<a href=\"https://www.kaggle.com/code/tatamikenn/stanford-3d-folding-minimal-eda\" target=\"_blank\">https://www.kaggle.com/code/tatamikenn/stanford-3d-folding-minimal-eda</a></p>\n<h2>Reference</h2>\n<ul>\n<li>[1] <a href=\"https://github.com/avirshup/py3dmol\" target=\"_blank\">https://github.com/avirshup/py3dmol</a></li>\n</ul>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F63548f0d1dfd50d91853ffc9ec57d5da%2FScreenshot%202025-03-27%20at%2021.21.29.png?generation=1743078195488784&amp;alt=media\" alt=\"\"><br>\n<img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F8782d3c94a089802fc1e004581ed46ed%2FScreenshot%202025-03-27%20at%2021.21.33.png?generation=1743078207386261&amp;alt=media\" alt=\"\"></p>",
  "messages": [
    {
      "id": 3161025,
      "postDate": "2025-03-27T12:28:33.463Z",
      "content": "<p>This demo lets you view 3D molecular structures from PDB files right in your browser, using a Python tool called py3Dmol [1]. It's useful for checking both known and predicted structures in an interactive way.</p>\n<p>notebook:<br>\n<a href=\"https://www.kaggle.com/code/tatamikenn/stanford-3d-folding-minimal-eda\" target=\"_blank\">https://www.kaggle.com/code/tatamikenn/stanford-3d-folding-minimal-eda</a></p>\n<h2>Reference</h2>\n<ul>\n<li>[1] <a href=\"https://github.com/avirshup/py3dmol\" target=\"_blank\">https://github.com/avirshup/py3dmol</a></li>\n</ul>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F63548f0d1dfd50d91853ffc9ec57d5da%2FScreenshot%202025-03-27%20at%2021.21.29.png?generation=1743078195488784&amp;alt=media\" alt=\"\"><br>\n<img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F8782d3c94a089802fc1e004581ed46ed%2FScreenshot%202025-03-27%20at%2021.21.33.png?generation=1743078207386261&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "This demo lets you view 3D molecular structures from PDB files right in your browser, using a Python tool called py3Dmol [1]. It's useful for checking both known and predicted structures in an interactive way.\n\nnotebook:\nhttps://www.kaggle.com/code/tatamikenn/stanford-3d-folding-minimal-eda\n\n## Reference\n\n- [1] https://github.com/avirshup/py3dmol\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F63548f0d1dfd50d91853ffc9ec57d5da%2FScreenshot%202025-03-27%20at%2021.21.29.png?generation=1743078195488784&alt=media)\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F8782d3c94a089802fc1e004581ed46ed%2FScreenshot%202025-03-27%20at%2021.21.33.png?generation=1743078207386261&alt=media)",
      "votes": 8
    }
  ],
  "comments": [],
  "raw_markdown_by_id": {
    "3161025": "This demo lets you view 3D molecular structures from PDB files right in your browser, using a Python tool called py3Dmol [1]. It's useful for checking both known and predicted structures in an interactive way.\n\nnotebook:\nhttps://www.kaggle.com/code/tatamikenn/stanford-3d-folding-minimal-eda\n\n## Reference\n\n- [1] https://github.com/avirshup/py3dmol\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F63548f0d1dfd50d91853ffc9ec57d5da%2FScreenshot%202025-03-27%20at%2021.21.29.png?generation=1743078195488784&alt=media)\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F4910466%2F8782d3c94a089802fc1e004581ed46ed%2FScreenshot%202025-03-27%20at%2021.21.33.png?generation=1743078207386261&alt=media)"
  }
}