{
  "id": 568825,
  "title": "Data in PDB format?",
  "url": "/competitions/stanford-rna-3d-folding/discussion/568825",
  "author_name": "",
  "post_date": "2025-03-18T07:02:26.877868600Z",
  "votes": 2,
  "comment_count": 3,
  "views": 0,
  "content": "<p>Dear all,</p>\n<p>do anybody knows a way to convert challenge data (both train and submission) into .pdb (Protein Data Bank) format on the fly? And could organizers, please, provide data in PDB format as well?</p>",
  "messages": [
    {
      "id": "3152793",
      "postDate": "03/18/2025 07:02:26",
      "content": "<p>Dear all,</p>\n<p>do anybody knows a way to convert challenge data (both train and submission) into .pdb (Protein Data Bank) format on the fly? And could organizers, please, provide data in PDB format as well?</p>",
      "rawMarkdown": "Dear all,\n\ndo anybody knows a way to convert challenge data (both train and submission) into .pdb (Protein Data Bank) format on the fly? And could organizers, please, provide data in PDB format as well?",
      "votes": null
    },
    {
      "id": "3152806",
      "postDate": "03/18/2025 07:19:55",
      "content": "<p>To view PDB structures:</p>\n<p><a href=\"https://www.rcsb.org/structure/1SCL\" target=\"_blank\">https://www.rcsb.org/structure/1SCL</a></p>\n<p>Replace <code>1SCL</code> with <code>1MME</code> or any other 4-letter PDB code.</p>\n<p>To download:</p>\n<pre><code>wget https:files.rcsb.orgSCL.pdb\n</code></pre>\n<p>The same logic applies here for code replacement.</p>",
      "rawMarkdown": "To view PDB structures:\n\nhttps://www.rcsb.org/structure/1SCL\n\nReplace `1SCL` with `1MME` or any other 4-letter PDB code.\n\nTo download:\n\n    wget https://files.rcsb.org/download/1SCL.pdb\n\nThe same logic applies here for code replacement.",
      "votes": null
    },
    {
      "id": "3153032",
      "postDate": "03/18/2025 11:15:19",
      "content": "<p>Thanks Tilii!</p>",
      "rawMarkdown": "Thanks Tilii!",
      "votes": null
    },
    {
      "id": "3153062",
      "postDate": "03/18/2025 11:39:46",
      "content": "<p>It's fine for training, but unfortunately doesn't work on submisiion when internet is not available..</p>",
      "rawMarkdown": "It's fine for training, but unfortunately doesn't work on submisiion when internet is not available..",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 3152806,
      "author_name": "tilii7",
      "author_url": "",
      "post_date": "03/18/2025 07:19:55",
      "content": "<p>To view PDB structures:</p>\n<p><a href=\"https://www.rcsb.org/structure/1SCL\" target=\"_blank\">https://www.rcsb.org/structure/1SCL</a></p>\n<p>Replace <code>1SCL</code> with <code>1MME</code> or any other 4-letter PDB code.</p>\n<p>To download:</p>\n<pre><code>wget https:files.rcsb.orgSCL.pdb\n</code></pre>\n<p>The same logic applies here for code replacement.</p>",
      "votes": null,
      "replies": [
        {
          "id": 3153032,
          "author_name": "polishch",
          "author_url": "",
          "post_date": "03/18/2025 11:15:19",
          "content": "<p>Thanks Tilii!</p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 3153062,
          "author_name": "polishch",
          "author_url": "",
          "post_date": "03/18/2025 11:39:46",
          "content": "<p>It's fine for training, but unfortunately doesn't work on submisiion when internet is not available..</p>",
          "votes": null,
          "replies": []
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "3152793": "Dear all,\n\ndo anybody knows a way to convert challenge data (both train and submission) into .pdb (Protein Data Bank) format on the fly? And could organizers, please, provide data in PDB format as well?",
    "3152806": "To view PDB structures:\n\nhttps://www.rcsb.org/structure/1SCL\n\nReplace `1SCL` with `1MME` or any other 4-letter PDB code.\n\nTo download:\n\n    wget https://files.rcsb.org/download/1SCL.pdb\n\nThe same logic applies here for code replacement.",
    "3153032": "Thanks Tilii!",
    "3153062": "It's fine for training, but unfortunately doesn't work on submisiion when internet is not available.."
  },
  "source": "meta"
}