{ "id": 565292, "title": "Starting materials and references", "url": "/competitions/stanford-rna-3d-folding/discussion/565292", "author_name": "", "post_date": "2025-02-27T20:32:29.156823500Z", "votes": 42, "comment_count": 11, "views": 0, "content": "

Hello all,

\n

Wishing you the best for the competition! Please find below a few curated references from across Kaggle and otherwise-

\n

Similar Kaggle competitions

\n

Stanford Ribonanza RNA Folding

\n

Popular kernels

\n\n

High scoring approaches

\n\n

Open Problems - Multimodal Single-Cell Integration

\n

Popular kernels

\n\n

High scoring approaches

\n\n

Reading materials

\n\n

All the best, happy learning and regards!

", "messages": [ { "id": "3135780", "postDate": "02/27/2025 20:32:29", "content": "

Hello all,

\n

Wishing you the best for the competition! Please find below a few curated references from across Kaggle and otherwise-

\n

Similar Kaggle competitions

\n

Stanford Ribonanza RNA Folding

\n

Popular kernels

\n\n

High scoring approaches

\n\n

Open Problems - Multimodal Single-Cell Integration

\n

Popular kernels

\n\n

High scoring approaches

\n\n

Reading materials

\n\n

All the best, happy learning and regards!

", "rawMarkdown": "Hello all,\n\nWishing you the best for the competition! Please find below a few curated references from across Kaggle and otherwise- \n\n# Similar Kaggle competitions\n## [Stanford Ribonanza RNA Folding](https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding)\n### Popular kernels \n- https://www.kaggle.com/code/iafoss/rna-starter-0-186-lb\n- https://www.kaggle.com/code/ayushs9020/understanding-the-competition-standford-ribonaza\n- https://www.kaggle.com/code/dschettler8845/sr-rna-reactivity-learn-eda-baseline\n- https://www.kaggle.com/code/iafoss/rna-starter-submission-0-186-lb\n- https://www.kaggle.com/code/shlomoron/srrf-transformer-tpu-training\n- https://www.kaggle.com/code/rafiko1/standford-ribonanza-rna-theory-short-eda\n- https://www.kaggle.com/code/usharengaraju/keras-grownet-w-b\n- https://www.kaggle.com/code/jocelyndumlao/rna-structure-prediction-performance-analysis\n- https://www.kaggle.com/code/alexandervc/ribonanza-1-eda\n- https://www.kaggle.com/code/umar47/rna-folding-reduce-memory-add-features-seq2seq\n\n### High scoring approaches \n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460121\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460316\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460403\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460203\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460250\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460190\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460222\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/463352\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460130\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460192\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460285\n\n## [Open Problems - Multimodal Single-Cell Integration](https://www.kaggle.com/competitions/open-problems-multimodal)\n### Popular kernels \n- https://www.kaggle.com/code/ambrosm/msci-eda-which-makes-sense\n- https://www.kaggle.com/code/ambrosm/msci-citeseq-quickstart\n- https://www.kaggle.com/code/pourchot/all-in-one-citeseq-multiome-with-keras\n- https://www.kaggle.com/code/vslaykovsky/lb-0-811-normalized-ensembles-for-pearson-s-r\n- https://www.kaggle.com/code/fabiencrom/msci-multiome-quickstart-w-sparse-matrices\n- https://www.kaggle.com/code/ambrosm/msci-multiome-quickstart\n- https://www.kaggle.com/code/xiafire/lb-t15-msci-multiome-catboostregressor\n- https://www.kaggle.com/code/swimmy/lgbm-baseline-msci-citeseq\n\n### High scoring approaches \n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366961\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366453\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366428\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366460\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366409\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366417\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366471\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366667\n\n# Reading materials\n- https://www.sciencedirect.com/science/article/abs/pii/S0022283699930012\n- https://www.annualreviews.org/content/journals/10.1146/annurev.biophys.26.1.113\n- https://www.sciencedirect.com/science/article/pii/S0021925818902863\n- https://www.nature.com/articles/nrm1497\n- https://www.annualreviews.org/content/journals/10.1146/annurev.biophys.34.040204.144511\n- https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=RNA+folding&btnG=\n- https://academic.oup.com/nar/article/13/5/1717/1035042\n- https://www.cell.com/trends/biochemical-sciences/fulltext/S0968-0004(96)80169-1\n- https://www.sciencedirect.com/science/article/abs/pii/S0959440X03000666\n- https://www.sciencedirect.com/science/article/abs/pii/S0959440X02003251\n\nAll the best, happy learning and regards!", "votes": null }, { "id": "3135870", "postDate": "02/28/2025 00:23:06", "content": "

Thank you I’ll keep compete until I die haha.

", "rawMarkdown": "Thank you I’ll keep compete until I die haha.", "votes": null }, { "id": "3135925", "postDate": "02/28/2025 02:47:41", "content": "

Hello @ravi20076, Thanks for sharing there is a lot of mateiral here.

", "rawMarkdown": "Hello @ravi20076, Thanks for sharing there is a lot of mateiral here.", "votes": null }, { "id": "3139141", "postDate": "03/03/2025 08:23:27", "content": "

Thank you for the resources!

", "rawMarkdown": "Thank you for the resources!", "votes": null }, { "id": "3140133", "postDate": "03/04/2025 10:06:39", "content": "

Thanks for sharing valuable resources.

", "rawMarkdown": "Thanks for sharing valuable resources.", "votes": null }, { "id": "3140692", "postDate": "03/04/2025 20:29:28", "content": "

Thanks as always @ravi20076 !

", "rawMarkdown": "Thanks as always @ravi20076 !", "votes": null }, { "id": "3143219", "postDate": "03/07/2025 02:59:03", "content": "

Thanks man 🫡

", "rawMarkdown": "Thanks man 🫡", "votes": null }, { "id": "3146365", "postDate": "03/10/2025 19:13:42", "content": "

Thanks for sharing

", "rawMarkdown": "Thanks for sharing", "votes": null }, { "id": "3150090", "postDate": "03/15/2025 04:06:01", "content": "

I don't see how the first youtube video is relevant here: https://www.youtube.com/watch?v=G0FU7kLb1ME . Can you help me understand or is this a miss?

", "rawMarkdown": "I don't see how the first youtube video is relevant here: https://www.youtube.com/watch?v=G0FU7kLb1ME . Can you help me understand or is this a miss?", "votes": null }, { "id": "3150176", "postDate": "03/15/2025 06:16:18", "content": "

Sorry, removed it - it was not relevant indeed @lordpatil

", "rawMarkdown": "Sorry, removed it - it was not relevant indeed @lordpatil", "votes": null }, { "id": "3150293", "postDate": "03/15/2025 09:59:18", "content": "

no worries, looking at it again i think all of the youtube videos aren't related to this competition i think

", "rawMarkdown": "no worries, looking at it again i think all of the youtube videos aren't related to this competition i think", "votes": null }, { "id": "3201683", "postDate": "05/14/2025 08:49:46", "content": "

Thanks for sharing, found that very helpfull.

", "rawMarkdown": "Thanks for sharing, found that very helpfull.", "votes": null } ], "comments": [ { "id": 3135870, "author_name": "tom99763", "author_url": "", "post_date": "02/28/2025 00:23:06", "content": "

Thank you I’ll keep compete until I die haha.

", "votes": null, "replies": [] }, { "id": 3135925, "author_name": "cv13j0", "author_url": "", "post_date": "02/28/2025 02:47:41", "content": "

Hello @ravi20076, Thanks for sharing there is a lot of mateiral here.

", "votes": null, "replies": [] }, { "id": 3139141, "author_name": "fransvalli", "author_url": "", "post_date": "03/03/2025 08:23:27", "content": "

Thank you for the resources!

", "votes": null, "replies": [] }, { "id": 3140133, "author_name": "muhammedtausif", "author_url": "", "post_date": "03/04/2025 10:06:39", "content": "

Thanks for sharing valuable resources.

", "votes": null, "replies": [] }, { "id": 3140692, "author_name": "muhammadameenbohio", "author_url": "", "post_date": "03/04/2025 20:29:28", "content": "

Thanks as always @ravi20076 !

", "votes": null, "replies": [] }, { "id": 3143219, "author_name": "tanishq51", "author_url": "", "post_date": "03/07/2025 02:59:03", "content": "

Thanks man 🫡

", "votes": null, "replies": [] }, { "id": 3146365, "author_name": "mucahitrtn", "author_url": "", "post_date": "03/10/2025 19:13:42", "content": "

Thanks for sharing

", "votes": null, "replies": [] }, { "id": 3150090, "author_name": "lordpatil", "author_url": "", "post_date": "03/15/2025 04:06:01", "content": "

I don't see how the first youtube video is relevant here: https://www.youtube.com/watch?v=G0FU7kLb1ME . Can you help me understand or is this a miss?

", "votes": null, "replies": [ { "id": 3150176, "author_name": "ravi20076", "author_url": "", "post_date": "03/15/2025 06:16:18", "content": "

Sorry, removed it - it was not relevant indeed @lordpatil

", "votes": null, "replies": [ { "id": 3150293, "author_name": "lordpatil", "author_url": "", "post_date": "03/15/2025 09:59:18", "content": "

no worries, looking at it again i think all of the youtube videos aren't related to this competition i think

", "votes": null, "replies": [] } ] } ] }, { "id": 3201683, "author_name": "xaocreal", "author_url": "", "post_date": "05/14/2025 08:49:46", "content": "

Thanks for sharing, found that very helpfull.

", "votes": null, "replies": [] } ], "raw_markdown_by_id": { "3135780": "Hello all,\n\nWishing you the best for the competition! Please find below a few curated references from across Kaggle and otherwise- \n\n# Similar Kaggle competitions\n## [Stanford Ribonanza RNA Folding](https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding)\n### Popular kernels \n- https://www.kaggle.com/code/iafoss/rna-starter-0-186-lb\n- https://www.kaggle.com/code/ayushs9020/understanding-the-competition-standford-ribonaza\n- https://www.kaggle.com/code/dschettler8845/sr-rna-reactivity-learn-eda-baseline\n- https://www.kaggle.com/code/iafoss/rna-starter-submission-0-186-lb\n- https://www.kaggle.com/code/shlomoron/srrf-transformer-tpu-training\n- https://www.kaggle.com/code/rafiko1/standford-ribonanza-rna-theory-short-eda\n- https://www.kaggle.com/code/usharengaraju/keras-grownet-w-b\n- https://www.kaggle.com/code/jocelyndumlao/rna-structure-prediction-performance-analysis\n- https://www.kaggle.com/code/alexandervc/ribonanza-1-eda\n- https://www.kaggle.com/code/umar47/rna-folding-reduce-memory-add-features-seq2seq\n\n### High scoring approaches \n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460121\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460316\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460403\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460203\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460250\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460190\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460222\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/463352\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460130\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460192\n- https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/discussion/460285\n\n## [Open Problems - Multimodal Single-Cell Integration](https://www.kaggle.com/competitions/open-problems-multimodal)\n### Popular kernels \n- https://www.kaggle.com/code/ambrosm/msci-eda-which-makes-sense\n- https://www.kaggle.com/code/ambrosm/msci-citeseq-quickstart\n- https://www.kaggle.com/code/pourchot/all-in-one-citeseq-multiome-with-keras\n- https://www.kaggle.com/code/vslaykovsky/lb-0-811-normalized-ensembles-for-pearson-s-r\n- https://www.kaggle.com/code/fabiencrom/msci-multiome-quickstart-w-sparse-matrices\n- https://www.kaggle.com/code/ambrosm/msci-multiome-quickstart\n- https://www.kaggle.com/code/xiafire/lb-t15-msci-multiome-catboostregressor\n- https://www.kaggle.com/code/swimmy/lgbm-baseline-msci-citeseq\n\n### High scoring approaches \n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366961\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366453\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366428\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366460\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366409\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366417\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366471\n- https://www.kaggle.com/competitions/open-problems-multimodal/discussion/366667\n\n# Reading materials\n- https://www.sciencedirect.com/science/article/abs/pii/S0022283699930012\n- https://www.annualreviews.org/content/journals/10.1146/annurev.biophys.26.1.113\n- https://www.sciencedirect.com/science/article/pii/S0021925818902863\n- https://www.nature.com/articles/nrm1497\n- https://www.annualreviews.org/content/journals/10.1146/annurev.biophys.34.040204.144511\n- https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=RNA+folding&btnG=\n- https://academic.oup.com/nar/article/13/5/1717/1035042\n- https://www.cell.com/trends/biochemical-sciences/fulltext/S0968-0004(96)80169-1\n- https://www.sciencedirect.com/science/article/abs/pii/S0959440X03000666\n- https://www.sciencedirect.com/science/article/abs/pii/S0959440X02003251\n\nAll the best, happy learning and regards!", "3135870": "Thank you I’ll keep compete until I die haha.", "3135925": "Hello @ravi20076, Thanks for sharing there is a lot of mateiral here.", "3139141": "Thank you for the resources!", "3140133": "Thanks for sharing valuable resources.", "3140692": "Thanks as always @ravi20076 !", "3143219": "Thanks man 🫡", "3146365": "Thanks for sharing", "3150090": "I don't see how the first youtube video is relevant here: https://www.youtube.com/watch?v=G0FU7kLb1ME . Can you help me understand or is this a miss?", "3150176": "Sorry, removed it - it was not relevant indeed @lordpatil", "3150293": "no worries, looking at it again i think all of the youtube videos aren't related to this competition i think", "3201683": "Thanks for sharing, found that very helpfull." }, "source": "meta" }