{"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"name":"python","version":"3.11.11","mimetype":"text/x-python","codemirror_mode":{"name":"ipython","version":3},"pygments_lexer":"ipython3","nbconvert_exporter":"python","file_extension":".py"},"kaggle":{"accelerator":"none","dataSources":[{"sourceId":87793,"databundleVersionId":12276181,"sourceType":"competition"},{"sourceId":391050,"sourceType":"modelInstanceVersion","isSourceIdPinned":true,"modelInstanceId":320730,"modelId":341308}],"dockerImageVersionId":31012,"isInternetEnabled":true,"language":"python","sourceType":"notebook","isGpuEnabled":false}},"nbformat_minor":4,"nbformat":4,"cells":[{"cell_type":"code","source":"import os\n\n\nos.environ[\"SCRIPT\"] = \"/kaggle/input/drfold2/pytorch/default/1/DRfold2/DRfold_infer.py\"\n\n\n\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-05-13T20:39:57.021687Z","iopub.execute_input":"2025-05-13T20:39:57.021896Z","iopub.status.idle":"2025-05-13T20:39:57.029659Z","shell.execute_reply.started":"2025-05-13T20:39:57.021877Z","shell.execute_reply":"2025-05-13T20:39:57.028735Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"!cp -r /kaggle/input/drfold2/pytorch/default/2/DRfold2 ./\n!cd DRfold2/Arena && make Arena","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-05-13T20:42:40.842653Z","iopub.execute_input":"2025-05-13T20:42:40.843014Z","iopub.status.idle":"2025-05-13T20:42:57.120319Z","shell.execute_reply.started":"2025-05-13T20:42:40.842986Z","shell.execute_reply":"2025-05-13T20:42:57.118968Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"!cd DRfold2 && python3 DRfold_infer.py test/seq.fasta test/output/\n\n\n\n","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2025-05-13T20:43:06.702882Z","iopub.execute_input":"2025-05-13T20:43:06.703195Z"}},"outputs":[],"execution_count":null}]}