{
  "id": 453611,
  "title": "All codons appeared in train data",
  "url": "/competitions/stanford-ribonanza-rna-folding/discussion/453611",
  "author_name": "",
  "post_date": "2023-11-07T02:58:18.010926600Z",
  "votes": 4,
  "comment_count": 4,
  "views": 0,
  "content": "<p><img src=\"https://pbs.twimg.com/media/F-TKXkAaoAA9RuC?format=png&amp;name=large\" alt=\"codons\"></p>\n<p>We can see that all 64 codons appear</p>",
  "messages": [
    {
      "id": "2515563",
      "postDate": "11/07/2023 02:58:18",
      "content": "<p><img src=\"https://pbs.twimg.com/media/F-TKXkAaoAA9RuC?format=png&amp;name=large\" alt=\"codons\"></p>\n<p>We can see that all 64 codons appear</p>",
      "rawMarkdown": "![codons](https://pbs.twimg.com/media/F-TKXkAaoAA9RuC?format=png&name=large)\n\nWe can see that all 64 codons appear",
      "votes": null
    },
    {
      "id": "2515786",
      "postDate": "11/07/2023 08:38:04",
      "content": "<p>As someone who knows basically nothing about RNA/DNA: what does this mean? </p>\n<p>Is there something special about codons (which I see are base triplets?) </p>",
      "rawMarkdown": "As someone who knows basically nothing about RNA/DNA: what does this mean? \n\nIs there something special about codons (which I see are base triplets?)",
      "votes": null
    },
    {
      "id": "2516233",
      "postDate": "11/07/2023 15:09:34",
      "content": "<p>What I'm trying to do is figure out how to extract features three by three<br>\na codon is like a word in the language of genetics, and each \"word\" (codon) stands for a specific amino acid, which are the building blocks of proteins.  For example, the codon AUG encodes for the amino acid methionine.<br>\nIn the process of protein synthesis, the sequence of codons in a gene is transcribed into messenger RNA (mRNA), and then this mRNA is translated into a sequence of amino acids to form a protein</p>",
      "rawMarkdown": "What I'm trying to do is figure out how to extract features three by three\na codon is like a word in the language of genetics, and each \"word\" (codon) stands for a specific amino acid, which are the building blocks of proteins.  For example, the codon AUG encodes for the amino acid methionine.\nIn the process of protein synthesis, the sequence of codons in a gene is transcribed into messenger RNA (mRNA), and then this mRNA is translated into a sequence of amino acids to form a protein",
      "votes": null
    },
    {
      "id": "2518510",
      "postDate": "11/09/2023 11:17:25",
      "content": "<p>And we know by sure that the codon lecture starts at 0 without any \"biological padding\"? Even more. Does all RNA sequences end to beign translated into a protein?</p>",
      "rawMarkdown": "And we know by sure that the codon lecture starts at 0 without any \"biological padding\"? Even more. Does all RNA sequences end to beign translated into a protein?",
      "votes": null
    },
    {
      "id": "2519388",
      "postDate": "11/10/2023 01:12:12",
      "content": "<p>The reading of codons in mRNA begins at the “start” codon, which is AUG in most cases<br>\nso in a sense, you could say that the reading starts at ‘0’ with the start codon, without any “biological padding”.</p>\n<p>not all RNA sequences end up being translated into proteins. messenger RNA (mRNA) is translated into proteins, while tRNA and rRNA does not.</p>",
      "rawMarkdown": "The reading of codons in mRNA begins at the “start” codon, which is AUG in most cases\nso in a sense, you could say that the reading starts at ‘0’ with the start codon, without any “biological padding”.\n\nnot all RNA sequences end up being translated into proteins. messenger RNA (mRNA) is translated into proteins, while tRNA and rRNA does not.",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 2515786,
      "author_name": "fnands",
      "author_url": "",
      "post_date": "11/07/2023 08:38:04",
      "content": "<p>As someone who knows basically nothing about RNA/DNA: what does this mean? </p>\n<p>Is there something special about codons (which I see are base triplets?) </p>",
      "votes": null,
      "replies": [
        {
          "id": 2516233,
          "author_name": "horikitasaku",
          "author_url": "",
          "post_date": "11/07/2023 15:09:34",
          "content": "<p>What I'm trying to do is figure out how to extract features three by three<br>\na codon is like a word in the language of genetics, and each \"word\" (codon) stands for a specific amino acid, which are the building blocks of proteins.  For example, the codon AUG encodes for the amino acid methionine.<br>\nIn the process of protein synthesis, the sequence of codons in a gene is transcribed into messenger RNA (mRNA), and then this mRNA is translated into a sequence of amino acids to form a protein</p>",
          "votes": null,
          "replies": [
            {
              "id": 2518510,
              "author_name": "sacuscreed",
              "author_url": "",
              "post_date": "11/09/2023 11:17:25",
              "content": "<p>And we know by sure that the codon lecture starts at 0 without any \"biological padding\"? Even more. Does all RNA sequences end to beign translated into a protein?</p>",
              "votes": null,
              "replies": [
                {
                  "id": 2519388,
                  "author_name": "horikitasaku",
                  "author_url": "",
                  "post_date": "11/10/2023 01:12:12",
                  "content": "<p>The reading of codons in mRNA begins at the “start” codon, which is AUG in most cases<br>\nso in a sense, you could say that the reading starts at ‘0’ with the start codon, without any “biological padding”.</p>\n<p>not all RNA sequences end up being translated into proteins. messenger RNA (mRNA) is translated into proteins, while tRNA and rRNA does not.</p>",
                  "votes": null,
                  "replies": []
                }
              ]
            }
          ]
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "2515563": "![codons](https://pbs.twimg.com/media/F-TKXkAaoAA9RuC?format=png&name=large)\n\nWe can see that all 64 codons appear",
    "2515786": "As someone who knows basically nothing about RNA/DNA: what does this mean? \n\nIs there something special about codons (which I see are base triplets?)",
    "2516233": "What I'm trying to do is figure out how to extract features three by three\na codon is like a word in the language of genetics, and each \"word\" (codon) stands for a specific amino acid, which are the building blocks of proteins.  For example, the codon AUG encodes for the amino acid methionine.\nIn the process of protein synthesis, the sequence of codons in a gene is transcribed into messenger RNA (mRNA), and then this mRNA is translated into a sequence of amino acids to form a protein",
    "2518510": "And we know by sure that the codon lecture starts at 0 without any \"biological padding\"? Even more. Does all RNA sequences end to beign translated into a protein?",
    "2519388": "The reading of codons in mRNA begins at the “start” codon, which is AUG in most cases\nso in a sense, you could say that the reading starts at ‘0’ with the start codon, without any “biological padding”.\n\nnot all RNA sequences end up being translated into proteins. messenger RNA (mRNA) is translated into proteins, while tRNA and rRNA does not."
  },
  "source": "meta"
}