{
  "id": 451823,
  "title": "Using ChatGPT to understand better the challenges underlying the competition and the approach taken by some of the participants with the most votes ",
  "url": "/competitions/stanford-ribonanza-rna-folding/discussion/451823",
  "author_name": "",
  "post_date": "2023-10-30T16:27:45.852403200Z",
  "votes": 1,
  "comment_count": 2,
  "views": 0,
  "content": "<p><a href=\"https://www.kaggle.com/code/julianmacnamara/stanford-rna-folding-competition-v0-1\" target=\"_blank\">Stanford RNA Folding competition v0.1</a> looks at:</p>\n<p><strong>RNA</strong></p>\n<ul>\n<li>What does RNA do in simple terms?</li>\n<li>What is the structure of RNA?</li>\n<li>What are the important fundamental properties of RNA structure?</li>\n<li>Why is a distinction drawn between RNA's primary and secondary structures?</li>\n<li>Can an RNA sequence have the same primary structure and different secondary structures?</li>\n<li>What is the significance of RNA’s secondary structure?</li>\n</ul>\n<p><strong>Initial EDA</strong></p>\n<ul>\n<li>How can the training data be used to build a model that predicts the structure of a RNA molecule?</li>\n<li>How can you visualize a reactivity profile?</li>\n<li>Setting up an RNA Science Environment</li>\n<li>Starters EDA + Fastai + RNN<ul>\n<li>An introduction to Codons<ul>\n<li>History</li>\n<li>Analysis</li>\n<li>Frequency plots</li>\n<li>Heat map</li>\n<li>Nucleotide level heatmap</li>\n<li>Composition of A,U,G,C Nucleotides</li>\n<li>Bias due to Codon Pair Interaction</li>\n<li>3D Scatter Plot of Codon Counts for AUG, GCA, and GCU Codons</li></ul></li>\n<li>Embeddings (Word2Vec)</li></ul></li>\n<li>An approach using average Reactivity</li>\n<li>An approach using Seq-to-Seq RNN</li>\n<li>RNA Starter [0.186 LB]</li>\n<li>RNA Starter submission [.0186 LB]</li>\n</ul>\n<p>I hope it will prove useful to others who, like me, use Kaggle to understand the application of data science to new domains  and how top coders use python</p>",
  "messages": [
    {
      "id": "2505471",
      "postDate": "10/30/2023 16:27:45",
      "content": "<p><a href=\"https://www.kaggle.com/code/julianmacnamara/stanford-rna-folding-competition-v0-1\" target=\"_blank\">Stanford RNA Folding competition v0.1</a> looks at:</p>\n<p><strong>RNA</strong></p>\n<ul>\n<li>What does RNA do in simple terms?</li>\n<li>What is the structure of RNA?</li>\n<li>What are the important fundamental properties of RNA structure?</li>\n<li>Why is a distinction drawn between RNA's primary and secondary structures?</li>\n<li>Can an RNA sequence have the same primary structure and different secondary structures?</li>\n<li>What is the significance of RNA’s secondary structure?</li>\n</ul>\n<p><strong>Initial EDA</strong></p>\n<ul>\n<li>How can the training data be used to build a model that predicts the structure of a RNA molecule?</li>\n<li>How can you visualize a reactivity profile?</li>\n<li>Setting up an RNA Science Environment</li>\n<li>Starters EDA + Fastai + RNN<ul>\n<li>An introduction to Codons<ul>\n<li>History</li>\n<li>Analysis</li>\n<li>Frequency plots</li>\n<li>Heat map</li>\n<li>Nucleotide level heatmap</li>\n<li>Composition of A,U,G,C Nucleotides</li>\n<li>Bias due to Codon Pair Interaction</li>\n<li>3D Scatter Plot of Codon Counts for AUG, GCA, and GCU Codons</li></ul></li>\n<li>Embeddings (Word2Vec)</li></ul></li>\n<li>An approach using average Reactivity</li>\n<li>An approach using Seq-to-Seq RNN</li>\n<li>RNA Starter [0.186 LB]</li>\n<li>RNA Starter submission [.0186 LB]</li>\n</ul>\n<p>I hope it will prove useful to others who, like me, use Kaggle to understand the application of data science to new domains  and how top coders use python</p>",
      "rawMarkdown": "[Stanford RNA Folding competition v0.1](https://www.kaggle.com/code/julianmacnamara/stanford-rna-folding-competition-v0-1) looks at:\n\n**RNA**\n- What does RNA do in simple terms?\n- What is the structure of RNA?\n- What are the important fundamental properties of RNA structure?\n- Why is a distinction drawn between RNA's primary and secondary structures?\n- Can an RNA sequence have the same primary structure and different secondary structures?\n- What is the significance of RNA’s secondary structure?\n\n**Initial EDA**\n- How can the training data be used to build a model that predicts the structure of a RNA molecule?\n- How can you visualize a reactivity profile?\n- Setting up an RNA Science Environment\n- Starters EDA + Fastai + RNN\n    - An introduction to Codons\n        - History\n        - Analysis\n        - Frequency plots\n        - Heat map\n        - Nucleotide level heatmap\n        - Composition of A,U,G,C Nucleotides\n        - Bias due to Codon Pair Interaction\n        - 3D Scatter Plot of Codon Counts for AUG, GCA, and GCU Codons\n    - Embeddings (Word2Vec)\n- An approach using average Reactivity\n- An approach using Seq-to-Seq RNN\n- RNA Starter [0.186 LB]\n- RNA Starter submission [.0186 LB]\n\nI hope it will prove useful to others who, like me, use Kaggle to understand the application of data science to new domains  and how top coders use python",
      "votes": null
    },
    {
      "id": "2505510",
      "postDate": "10/30/2023 16:45:25",
      "content": "<p>The Stanford RNA Folding competition v0.1 provides a valuable exploration of RNA structure prediction and demonstrates diverse data science approaches, making it a helpful resource for those interested in the intersection of biology and data analysis on platforms like Kaggle.</p>",
      "rawMarkdown": "The Stanford RNA Folding competition v0.1 provides a valuable exploration of RNA structure prediction and demonstrates diverse data science approaches, making it a helpful resource for those interested in the intersection of biology and data analysis on platforms like Kaggle.",
      "votes": null
    },
    {
      "id": "2505878",
      "postDate": "10/30/2023 23:10:54",
      "content": "<p>Hi Bhavesh<br>\nMany thanks for your kind words</p>",
      "rawMarkdown": "Hi Bhavesh\nMany thanks for your kind words",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 2505510,
      "author_name": "bhavesh1335",
      "author_url": "",
      "post_date": "10/30/2023 16:45:25",
      "content": "<p>The Stanford RNA Folding competition v0.1 provides a valuable exploration of RNA structure prediction and demonstrates diverse data science approaches, making it a helpful resource for those interested in the intersection of biology and data analysis on platforms like Kaggle.</p>",
      "votes": null,
      "replies": [
        {
          "id": 2505878,
          "author_name": "julianmacnamara",
          "author_url": "",
          "post_date": "10/30/2023 23:10:54",
          "content": "<p>Hi Bhavesh<br>\nMany thanks for your kind words</p>",
          "votes": null,
          "replies": []
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "2505471": "[Stanford RNA Folding competition v0.1](https://www.kaggle.com/code/julianmacnamara/stanford-rna-folding-competition-v0-1) looks at:\n\n**RNA**\n- What does RNA do in simple terms?\n- What is the structure of RNA?\n- What are the important fundamental properties of RNA structure?\n- Why is a distinction drawn between RNA's primary and secondary structures?\n- Can an RNA sequence have the same primary structure and different secondary structures?\n- What is the significance of RNA’s secondary structure?\n\n**Initial EDA**\n- How can the training data be used to build a model that predicts the structure of a RNA molecule?\n- How can you visualize a reactivity profile?\n- Setting up an RNA Science Environment\n- Starters EDA + Fastai + RNN\n    - An introduction to Codons\n        - History\n        - Analysis\n        - Frequency plots\n        - Heat map\n        - Nucleotide level heatmap\n        - Composition of A,U,G,C Nucleotides\n        - Bias due to Codon Pair Interaction\n        - 3D Scatter Plot of Codon Counts for AUG, GCA, and GCU Codons\n    - Embeddings (Word2Vec)\n- An approach using average Reactivity\n- An approach using Seq-to-Seq RNN\n- RNA Starter [0.186 LB]\n- RNA Starter submission [.0186 LB]\n\nI hope it will prove useful to others who, like me, use Kaggle to understand the application of data science to new domains  and how top coders use python",
    "2505510": "The Stanford RNA Folding competition v0.1 provides a valuable exploration of RNA structure prediction and demonstrates diverse data science approaches, making it a helpful resource for those interested in the intersection of biology and data analysis on platforms like Kaggle.",
    "2505878": "Hi Bhavesh\nMany thanks for your kind words"
  },
  "source": "meta"
}