Hi Friends,
\nIs there another link / seperate instructions to download eternafold for mfe and bpps prediction? I'm trying to access the zip using the link provided in the starter notebooks, but it seems to be unavailable.
\n**Command: **
\n\n**Output: **
\n", "messages": [ { "id": "2445804", "postDate": "09/19/2023 05:04:13", "content": "Hi Friends,
\nIs there another link / seperate instructions to download eternafold for mfe and bpps prediction? I'm trying to access the zip using the link provided in the starter notebooks, but it seems to be unavailable.
\n**Command: **
\n\n**Output: **
\n", "rawMarkdown": "Hi Friends, \n\nIs there another link / seperate instructions to download eternafold for mfe and bpps prediction? I'm trying to access the zip using the link provided in the starter notebooks, but it seems to be unavailable. \n\n**Command: **\n\nwget -q https://artprodeus21.artifacts.visualstudio.com/A910fa339-c7c2-46e8-a579-7ea247548706/84710dde-1620-425b-80d0-4cf5baca359d/_apis/artifact/cGlwZWxpbmVhcnRpZmFjdDovL2NvbmRhLWZvcmdlL3Byb2plY3RJZC84NDcxMGRkZS0xNjIwLTQyNWItODBkMC00Y2Y1YmFjYTM1OWQvYnVpbGRJZC83NzI5MTAvYXJ0aWZhY3ROYW1lL2NvbmRhX3BrZ3NfbGludXg1/content?format=zip\n\n**Output: **\n\nno matches found: https://artprodeus21.artifacts.visualstudio.com/A910fa339-c7c2-46e8-a579-7ea247548706/84710dde-1620-425b-80d0-4cf5baca359d/_apis/artifact/cGlwZWxpbmVhcnRpZmFjdDovL2NvbmRhLWZvcmdlL3Byb2plY3RJZC84NDcxMGRkZS0xNjIwLTQyNWItODBkMC00Y2Y1YmFjYTM1OWQvYnVpbGRJZC83NzI5MTAvYXJ0aWZhY3ROYW1lL2NvbmRhX3BrZ3NfbGludXg1/content?format=zip", "votes": null }, { "id": "2445816", "postDate": "09/19/2023 05:10:53", "content": "Hi Akash! That link used a direct output of an Azure build pipeline as a temporary measure. If you check the updated version of that introductory notebook, you'll see that EternaFold can now be downloaded from Bioconda with the command conda install -c bioconda eternafold. If you want to compile from source yourself, the code is available on the EternaFold Github repo.
Gotcha, that makes sense. Thanks for the quick response @brainbowrna .
\nI thought of compiling from source, but didn't know if I could compile / make on a Kaggle environment. It's good that there's a conda install though, that makes it way easier.
", "rawMarkdown": "Gotcha, that makes sense. Thanks for the quick response @brainbowrna . \n\nI thought of compiling from source, but didn't know if I could compile / make on a Kaggle environment. It's good that there's a conda install though, that makes it way easier.", "votes": null }, { "id": "2535001", "postDate": "11/23/2023 04:03:32", "content": "I was attempting to do this through google colab so I could have access to a GPU. I am struggling to get this package as well… Conda install does not work on google colab. Do I need to install from Github then?
", "rawMarkdown": "I was attempting to do this through google colab so I could have access to a GPU. I am struggling to get this package as well... Conda install does not work on google colab. Do I need to install from Github then?", "votes": null } ], "comments": [ { "id": 2445816, "author_name": "brainbowrna", "author_url": "", "post_date": "09/19/2023 05:10:53", "content": "Hi Akash! That link used a direct output of an Azure build pipeline as a temporary measure. If you check the updated version of that introductory notebook, you'll see that EternaFold can now be downloaded from Bioconda with the command conda install -c bioconda eternafold. If you want to compile from source yourself, the code is available on the EternaFold Github repo.
Gotcha, that makes sense. Thanks for the quick response @brainbowrna .
\nI thought of compiling from source, but didn't know if I could compile / make on a Kaggle environment. It's good that there's a conda install though, that makes it way easier.
", "votes": null, "replies": [] } ] }, { "id": 2535001, "author_name": "chasegraham", "author_url": "", "post_date": "11/23/2023 04:03:32", "content": "I was attempting to do this through google colab so I could have access to a GPU. I am struggling to get this package as well… Conda install does not work on google colab. Do I need to install from Github then?
", "votes": null, "replies": [] } ], "raw_markdown_by_id": { "2445804": "Hi Friends, \n\nIs there another link / seperate instructions to download eternafold for mfe and bpps prediction? I'm trying to access the zip using the link provided in the starter notebooks, but it seems to be unavailable. \n\n**Command: **\n\nwget -q https://artprodeus21.artifacts.visualstudio.com/A910fa339-c7c2-46e8-a579-7ea247548706/84710dde-1620-425b-80d0-4cf5baca359d/_apis/artifact/cGlwZWxpbmVhcnRpZmFjdDovL2NvbmRhLWZvcmdlL3Byb2plY3RJZC84NDcxMGRkZS0xNjIwLTQyNWItODBkMC00Y2Y1YmFjYTM1OWQvYnVpbGRJZC83NzI5MTAvYXJ0aWZhY3ROYW1lL2NvbmRhX3BrZ3NfbGludXg1/content?format=zip\n\n**Output: **\n\nno matches found: https://artprodeus21.artifacts.visualstudio.com/A910fa339-c7c2-46e8-a579-7ea247548706/84710dde-1620-425b-80d0-4cf5baca359d/_apis/artifact/cGlwZWxpbmVhcnRpZmFjdDovL2NvbmRhLWZvcmdlL3Byb2plY3RJZC84NDcxMGRkZS0xNjIwLTQyNWItODBkMC00Y2Y1YmFjYTM1OWQvYnVpbGRJZC83NzI5MTAvYXJ0aWZhY3ROYW1lL2NvbmRhX3BrZ3NfbGludXg1/content?format=zip", "2445816": "Hi Akash! That link used a direct output of an Azure build pipeline as a temporary measure. If you check the updated version of that [introductory notebook](https://www.kaggle.com/code/brainbowrna/rna-science-computational-environment), you'll see that EternaFold can now be downloaded from Bioconda with the command `conda install -c bioconda eternafold`. If you want to compile from source yourself, the code is available on the [EternaFold Github repo](https://github.com/eternagame/EternaFold).", "2445915": "Gotcha, that makes sense. Thanks for the quick response @brainbowrna . \n\nI thought of compiling from source, but didn't know if I could compile / make on a Kaggle environment. It's good that there's a conda install though, that makes it way easier.", "2535001": "I was attempting to do this through google colab so I could have access to a GPU. I am struggling to get this package as well... Conda install does not work on google colab. Do I need to install from Github then?" }, "source": "meta" }