{
  "id": 251686,
  "title": "Getting error readng dcom files",
  "url": "/competitions/siim-covid19-detection/discussion/251686",
  "author_name": "",
  "post_date": "2021-07-08T10:18:13.691374300Z",
  "votes": 1,
  "comment_count": 4,
  "views": 0,
  "content": "<p>Hi,</p>\n<p>I am getting this error reading some dcom files. Any leads:</p>\n<p>The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )</p>\n<p>regards<br>\nSouvik</p>",
  "messages": [
    {
      "id": "1380801",
      "postDate": "07/08/2021 10:18:13",
      "content": "<p>Hi,</p>\n<p>I am getting this error reading some dcom files. Any leads:</p>\n<p>The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )</p>\n<p>regards<br>\nSouvik</p>",
      "rawMarkdown": "Hi,\n\nI am getting this error reading some dcom files. Any leads:\n\nThe following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )\n\nregards\nSouvik",
      "votes": null
    },
    {
      "id": "1380849",
      "postDate": "07/08/2021 11:15:07",
      "content": "<p>Run <code>!conda install gdcm -c conda-forge -y</code> and then restart your notebook.</p>",
      "rawMarkdown": "Run `!conda install gdcm -c conda-forge -y` and then restart your notebook.",
      "votes": null
    },
    {
      "id": "1381003",
      "postDate": "07/08/2021 14:18:34",
      "content": "<p>Thanks David,</p>\n<p>If I execute the notebook manually after this the error is no longer there.But when I execute with save and run to create a version, it still gives the error. any workaround?</p>",
      "rawMarkdown": "Thanks David,\n\nIf I execute the notebook manually after this the error is no longer there.But when I execute with save and run to create a version, it still gives the error. any workaround?",
      "votes": null
    },
    {
      "id": "1381087",
      "postDate": "07/08/2021 16:07:48",
      "content": "<p>try that<br>\n<code>!pip install pylibjpeg</code></p>",
      "rawMarkdown": "try that\n`!pip install pylibjpeg`",
      "votes": null
    },
    {
      "id": "1381875",
      "postDate": "07/09/2021 09:55:47",
      "content": "<p>Thanks Aleksey<br>\n!pip install pylibjpeg pylibjpeg-libjpeg pydicom<br>\nDoesnt help </p>",
      "rawMarkdown": "Thanks Aleksey\n!pip install pylibjpeg pylibjpeg-libjpeg pydicom\nDoesnt help",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 1380849,
      "author_name": "davidbroberts",
      "author_url": "",
      "post_date": "07/08/2021 11:15:07",
      "content": "<p>Run <code>!conda install gdcm -c conda-forge -y</code> and then restart your notebook.</p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 1381003,
      "author_name": "souviksbhowmik",
      "author_url": "",
      "post_date": "07/08/2021 14:18:34",
      "content": "<p>Thanks David,</p>\n<p>If I execute the notebook manually after this the error is no longer there.But when I execute with save and run to create a version, it still gives the error. any workaround?</p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 1381087,
      "author_name": "alexpostnikov",
      "author_url": "",
      "post_date": "07/08/2021 16:07:48",
      "content": "<p>try that<br>\n<code>!pip install pylibjpeg</code></p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 1381875,
      "author_name": "souviksbhowmik",
      "author_url": "",
      "post_date": "07/09/2021 09:55:47",
      "content": "<p>Thanks Aleksey<br>\n!pip install pylibjpeg pylibjpeg-libjpeg pydicom<br>\nDoesnt help </p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "1380801": "Hi,\n\nI am getting this error reading some dcom files. Any leads:\n\nThe following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )\n\nregards\nSouvik",
    "1380849": "Run `!conda install gdcm -c conda-forge -y` and then restart your notebook.",
    "1381003": "Thanks David,\n\nIf I execute the notebook manually after this the error is no longer there.But when I execute with save and run to create a version, it still gives the error. any workaround?",
    "1381087": "try that\n`!pip install pylibjpeg`",
    "1381875": "Thanks Aleksey\n!pip install pylibjpeg pylibjpeg-libjpeg pydicom\nDoesnt help"
  },
  "source": "meta"
}