Hello guys, there are certain images that I am simply unable to decode with the help pf pydicom. It throws this error \"RuntimeError: The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )\".
\nAfter that I installed both the dependencies the error still persisted.
\nThen I restarted my environment and reinstalled all of them only to get this error while importing pydicom \"numpy.ndarray size changed, may indicate binary incompatibility. expected 88 from c header, got 80 from pyobject\".
\nCan someone please tell how did they deal with this issue and how were they able to convert all the images? Thanks in advance :D
", "messages": [ { "id": 1334818, "postDate": "2021-06-03T19:29:32.350Z", "content": "you can check this notebook, https://www.kaggle.com/awsaf49/pydicom-conda-helper.
\nYou've to install some libraries that's all.
Thank you, thanks a lot Awsaf :D
", "rawMarkdown": "Thank you, thanks a lot Awsaf :D" }, { "id": 1350362, "postDate": "2021-06-15T12:04:49.253Z", "content": "does this work for kaggle notebook too ?
", "rawMarkdown": "does this work for kaggle notebook too ?" }, { "id": 1350492, "postDate": "2021-06-15T13:27:50.843Z", "content": "I have completely created my dataset on the kaggle notebook, so yeah, it does :D
", "rawMarkdown": "I have completely created my dataset on the kaggle notebook, so yeah, it does :D" } ] }, { "id": 1334760, "postDate": "2021-06-03T18:41:57.947Z", "content": "Hello guys, there are certain images that I am simply unable to decode with the help pf pydicom. It throws this error \"RuntimeError: The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )\".
\nAfter that I installed both the dependencies the error still persisted.
\nThen I restarted my environment and reinstalled all of them only to get this error while importing pydicom \"numpy.ndarray size changed, may indicate binary incompatibility. expected 88 from c header, got 80 from pyobject\".
\nCan someone please tell how did they deal with this issue and how were they able to convert all the images? Thanks in advance :D
", "rawMarkdown": "Hello guys, there are certain images that I am simply unable to decode with the help pf pydicom. It throws this error \"RuntimeError: The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )\".\n\nAfter that I installed both the dependencies the error still persisted.\n\nThen I restarted my environment and reinstalled all of them only to get this error while importing pydicom \"numpy.ndarray size changed, may indicate binary incompatibility. expected 88 from c header, got 80 from pyobject\".\n\nCan someone please tell how did they deal with this issue and how were they able to convert all the images? Thanks in advance :D", "votes": 2 }, { "id": 1351425, "postDate": "2021-06-16T10:02:16.040Z", "content": "pip install pylibjpeg, pylibjpeg_libjpeg
", "rawMarkdown": "pip install pylibjpeg, pylibjpeg_libjpeg" }, { "id": 1344171, "postDate": "2021-06-10T16:59:44.017Z", "content": "Hi Awsaf. I installed all dependancies as you suggested in the notebook, but I still get the same error.
\nRuntimeError: The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. ), pylibjpeg (req. )
\nAny suggestions ?
\nThank you
unfortunately, I haven't faced any issues yet. Would you care to share your notebook?
", "rawMarkdown": "unfortunately, I haven't faced any issues yet. Would you care to share your notebook?" } ] }, { "id": 1350249, "postDate": "2021-06-15T11:29:34.337Z", "rawMarkdown": "", "isDeleted": true } ], "comments": [ { "id": 1334818, "author_name": "Awsaf", "author_url": "", "post_date": "2021-06-03T19:29:32.350000", "content": "you can check this notebook, https://www.kaggle.com/awsaf49/pydicom-conda-helper.
\nYou've to install some libraries that's all.
Thank you, thanks a lot Awsaf :D
", "votes": 0, "replies": [] }, { "id": 1350362, "author_name": "AJINKYA DESHPANDE", "author_url": "", "post_date": "2021-06-15T12:04:49.253000", "content": "does this work for kaggle notebook too ?
", "votes": 0, "replies": [] }, { "id": 1350492, "author_name": "Eddwait", "author_url": "", "post_date": "2021-06-15T13:27:50.843000", "content": "I have completely created my dataset on the kaggle notebook, so yeah, it does :D
", "votes": 0, "replies": [] } ] }, { "id": 1351425, "author_name": "GuoFu.Yang", "author_url": "", "post_date": "2021-06-16T10:02:16.040000", "content": "pip install pylibjpeg, pylibjpeg_libjpeg
", "votes": 0, "replies": [] }, { "id": 1344171, "author_name": "Abhisek Dash", "author_url": "", "post_date": "2021-06-10T16:59:44.017000", "content": "Hi Awsaf. I installed all dependancies as you suggested in the notebook, but I still get the same error.
\nRuntimeError: The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. ), pylibjpeg (req. )
\nAny suggestions ?
\nThank you
unfortunately, I haven't faced any issues yet. Would you care to share your notebook?
", "votes": 0, "replies": [] } ] }, { "id": 1350249, "author_name": "", "author_url": "", "post_date": "2021-06-15T11:29:34.337000", "content": "", "votes": 0, "replies": [] } ], "raw_markdown_by_id": { "1334818": "you can check this notebook, https://www.kaggle.com/awsaf49/pydicom-conda-helper.\nYou've to install some libraries that's all.", "1334760": "Hello guys, there are certain images that I am simply unable to decode with the help pf pydicom. It throws this error \"RuntimeError: The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. GDCM), pylibjpeg (req. )\".\n\nAfter that I installed both the dependencies the error still persisted.\n\nThen I restarted my environment and reinstalled all of them only to get this error while importing pydicom \"numpy.ndarray size changed, may indicate binary incompatibility. expected 88 from c header, got 80 from pyobject\".\n\nCan someone please tell how did they deal with this issue and how were they able to convert all the images? Thanks in advance :D", "1351425": "pip install pylibjpeg, pylibjpeg_libjpeg", "1344171": "Hi Awsaf. I installed all dependancies as you suggested in the notebook, but I still get the same error.\nRuntimeError: The following handlers are available to decode the pixel data however they are missing required dependencies: GDCM (req. ), pylibjpeg (req. )\nAny suggestions ? \nThank you", "1350249": "" } }