{"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"pygments_lexer":"ipython3","nbconvert_exporter":"python","version":"3.6.4","file_extension":".py","codemirror_mode":{"name":"ipython","version":3},"name":"python","mimetype":"text/x-python"}},"nbformat_minor":4,"nbformat":4,"cells":[{"cell_type":"code","source":"# This Python 3 environment comes with many helpful analytics libraries installed\n# It is defined by the kaggle/python Docker image: https://github.com/kaggle/docker-python\n# For example, here's several helpful packages to load\n\nimport numpy as np # linear algebra\nimport pandas as pd # data processing, CSV file I/O (e.g. pd.read_csv)\n\n# Input data files are available in the read-only \"../input/\" directory\n# For example, running this (by clicking run or pressing Shift+Enter) will list all files under the input directory\n\nimport os\nfor dirname, _, filenames in os.walk('/kaggle/input'):\n    for filename in filenames:\n        print(os.path.join(dirname, filename))\n\n# You can write up to 20GB to the current directory (/kaggle/working/) that gets preserved as output when you create a version using \"Save & Run All\" \n# You can also write temporary files to /kaggle/temp/, but they won't be saved outside of the current session","metadata":{"_uuid":"8f2839f25d086af736a60e9eeb907d3b93b6e0e5","_cell_guid":"b1076dfc-b9ad-4769-8c92-a6c4dae69d19","execution":{"iopub.status.busy":"2021-06-02T11:42:38.444024Z","iopub.execute_input":"2021-06-02T11:42:38.444390Z","iopub.status.idle":"2021-06-02T11:43:02.531724Z","shell.execute_reply.started":"2021-06-02T11:42:38.444358Z","shell.execute_reply":"2021-06-02T11:43:02.530705Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"import os \nimport sys\nimport random\nimport math\nimport numpy as np\nimport cv2\nimport matplotlib.pyplot as plt\nimport json\nimport pydicom\nfrom imgaug import augmenters as iaa\nfrom tqdm import tqdm\nimport pandas as pd \nimport glob ","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:43:17.158854Z","iopub.execute_input":"2021-06-02T11:43:17.159237Z","iopub.status.idle":"2021-06-02T11:43:17.164874Z","shell.execute_reply.started":"2021-06-02T11:43:17.159203Z","shell.execute_reply":"2021-06-02T11:43:17.163776Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"!git clone https://www.github.com/matterport/Mask_RCNN.git\nos.chdir('Mask_RCNN')\n#!python setup.py -q install","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:06:52.992037Z","iopub.execute_input":"2021-06-02T11:06:52.992551Z","iopub.status.idle":"2021-06-02T11:07:08.542960Z","shell.execute_reply.started":"2021-06-02T11:06:52.992520Z","shell.execute_reply":"2021-06-02T11:07:08.541967Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"! unzip ../input/siim-covid19-detection/train -d ./","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:43:44.032911Z","iopub.execute_input":"2021-06-02T11:43:44.033295Z","iopub.status.idle":"2021-06-02T11:43:44.758923Z","shell.execute_reply.started":"2021-06-02T11:43:44.033263Z","shell.execute_reply":"2021-06-02T11:43:44.757758Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"path_to_zip_file = \"../input/siim-covid19-detection/train\"\ndirectory_to_extract_to = \"./\"\nimport zipfile\nwith zipfile.ZipFile(path_to_zip_file, 'r') as zip_ref:\n    zip_ref.extractall(directory_to_extract_to)","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:43:50.864820Z","iopub.execute_input":"2021-06-02T11:43:50.865180Z","iopub.status.idle":"2021-06-02T11:43:50.895158Z","shell.execute_reply.started":"2021-06-02T11:43:50.865150Z","shell.execute_reply":"2021-06-02T11:43:50.893841Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"!mkdir ./train\n!mkdir ./test\n\n!unzip ../input/siim-covid19-detection/train -d ./train\n!unzip ../input/siim-covid19-detection/test -d ./test","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:43:59.988861Z","iopub.execute_input":"2021-06-02T11:43:59.989236Z","iopub.status.idle":"2021-06-02T11:44:02.881857Z","shell.execute_reply.started":"2021-06-02T11:43:59.989207Z","shell.execute_reply":"2021-06-02T11:44:02.880826Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":" ","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:23:09.714648Z","iopub.execute_input":"2021-06-02T11:23:09.715072Z","iopub.status.idle":"2021-06-02T11:23:10.442281Z","shell.execute_reply.started":"2021-06-02T11:23:09.715037Z","shell.execute_reply":"2021-06-02T11:23:10.441067Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"!mkdir ./train\nimport zipfile\nwith zipfile.ZipFile(\"../siim-covid19-detection/train\",\"r\") as zip_ref:\n    zip_ref.extractall(\"train\")","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:42:21.328554Z","iopub.execute_input":"2021-06-02T11:42:21.328972Z","iopub.status.idle":"2021-06-02T11:42:22.077122Z","shell.execute_reply.started":"2021-06-02T11:42:21.328936Z","shell.execute_reply":"2021-06-02T11:42:22.075578Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"import os\nprint(os.listdir(\"../input\"))","metadata":{"execution":{"iopub.status.busy":"2021-06-02T11:41:31.264867Z","iopub.execute_input":"2021-06-02T11:41:31.265340Z","iopub.status.idle":"2021-06-02T11:41:31.283221Z","shell.execute_reply.started":"2021-06-02T11:41:31.265300Z","shell.execute_reply":"2021-06-02T11:41:31.281796Z"},"trusted":true},"execution_count":null,"outputs":[]}]}