{
  "id": 18642,
  "title": "How to use Sunnybrook data?",
  "url": "/competitions/second-annual-data-science-bowl/discussion/18642",
  "author_name": "",
  "post_date": "2016-01-29T10:59:27.303Z",
  "votes": null,
  "comment_count": 7,
  "views": 713,
  "content": "<p>Hi,\n  I downloaded DICOM images and manual contours from this page <a href=\"http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/\">http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/</a>.</p>\n\n<p>For DICOM images, each patient has a folder which contains about 100 sub-folders named like this &quot;1.32_29sSOG9riFiQfXpHFLC6Zj453OlBWiLWSxWS5LSwJbcf7neGtrQ_iHpfyZ7_KVjcy_-x_-y_64_64_8&quot;, and the DICOM images are in these sub-folders.</p>\n\n<p>For manual contours, each patient has about 30~40 text files which have contour coordinates in them, and their file names are like this &quot;IM-0001-0047-icontour-manual.txt&quot;.</p>\n\n<p>Does anyone know the relation between them? Which contour is for which DICOM files? What does 0001 and 0047 mean in the file name?\n  Did I miss something? Is there a guide for Sunnybrook data?</p>\n\n<p>Thanks! </p>",
  "messages": [
    {
      "id": "106242",
      "postDate": "01/29/2016 10:59:27",
      "content": "<p>Hi,\n  I downloaded DICOM images and manual contours from this page <a href=\"http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/\">http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/</a>.</p>\n\n<p>For DICOM images, each patient has a folder which contains about 100 sub-folders named like this &quot;1.32_29sSOG9riFiQfXpHFLC6Zj453OlBWiLWSxWS5LSwJbcf7neGtrQ_iHpfyZ7_KVjcy_-x_-y_64_64_8&quot;, and the DICOM images are in these sub-folders.</p>\n\n<p>For manual contours, each patient has about 30~40 text files which have contour coordinates in them, and their file names are like this &quot;IM-0001-0047-icontour-manual.txt&quot;.</p>\n\n<p>Does anyone know the relation between them? Which contour is for which DICOM files? What does 0001 and 0047 mean in the file name?\n  Did I miss something? Is there a guide for Sunnybrook data?</p>\n\n<p>Thanks! </p>",
      "rawMarkdown": "Hi,\r\n  I downloaded DICOM images and manual contours from this page [http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/][1].\r\n\r\n  For DICOM images, each patient has a folder which contains about 100 sub-folders named like this \"1.32_29sSOG9riFiQfXpHFLC6Zj453OlBWiLWSxWS5LSwJbcf7neGtrQ_iHpfyZ7_KVjcy_-x_-y_64_64_8\", and the DICOM images are in these sub-folders.\r\n\r\n  For manual contours, each patient has about 30~40 text files which have contour coordinates in them, and their file names are like this \"IM-0001-0047-icontour-manual.txt\".\r\n\r\n  Does anyone know the relation between them? Which contour is for which DICOM files? What does 0001 and 0047 mean in the file name?\r\n  Did I miss something? Is there a guide for Sunnybrook data?\r\n\r\nThanks! \r\n\r\n\r\n  [1]: http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/",
      "votes": null
    },
    {
      "id": "106277",
      "postDate": "01/29/2016 17:16:14",
      "content": "<p>Found it!\n<a href=\"https://gist.github.com/ajsander/b65061d12f50de3cef5d#file-fcn_tutorial-ipynb\">https://gist.github.com/ajsander/b65061d12f50de3cef5d#file-fcn_tutorial-ipynb</a></p>",
      "rawMarkdown": "Found it!\r\nhttps://gist.github.com/ajsander/b65061d12f50de3cef5d#file-fcn_tutorial-ipynb",
      "votes": null
    },
    {
      "id": "329504",
      "postDate": "05/16/2018 15:53:22",
      "content": "<p>Thanks but it seems the data is now renamed such that the DICOM files don't follow the 'IM-' convention</p>",
      "rawMarkdown": "Thanks but it seems the data is now renamed such that the DICOM files don't follow the 'IM-' convention",
      "votes": null
    },
    {
      "id": "353123",
      "postDate": "07/06/2018 01:12:45",
      "content": "<p>Hello, I want to know if you have solved this problem. If you have solved it, can you share the solution? </p>",
      "rawMarkdown": "Hello, I want to know if you have solved this problem. If you have solved it, can you share the solution?",
      "votes": null
    },
    {
      "id": "368775",
      "postDate": "08/10/2018 19:19:28",
      "content": "<p>Hey Gavin.  Where you able to find a way to solve the changed naming convention for the DICOM files now that they have changed?  Can you please share if you have?  I have been stuck for some time.  </p>",
      "rawMarkdown": "Hey Gavin.  Where you able to find a way to solve the changed naming convention for the DICOM files now that they have changed?  Can you please share if you have?  I have been stuck for some time.",
      "votes": null
    },
    {
      "id": "368776",
      "postDate": "08/10/2018 19:20:14",
      "content": "<p>Can you please share if you were you able to find a way to solve this problem?  I would greatly appreciate it.  </p>",
      "rawMarkdown": "Can you please share if you were you able to find a way to solve this problem?  I would greatly appreciate it.",
      "votes": null
    },
    {
      "id": "455101",
      "postDate": "01/13/2019 01:35:18",
      "content": "<p>hey Zhao,</p>\n\n<p>Have you finally found out how to find the corresponding dicom file for each contour? </p>\n\n<p>Thanks</p>",
      "rawMarkdown": "hey Zhao,\n\nHave you finally found out how to find the corresponding dicom file for each contour? \n\nThanks",
      "votes": null
    },
    {
      "id": "903850",
      "postDate": "06/27/2020 06:50:06",
      "content": "<p>Hello, I could not read the SunnyBrook's new version dataset, however, I found the older version of this dataset <a href=\"https://sourceforge.net/projects/cardiac-mr/files/\">here</a> that is easily readable. </p>",
      "rawMarkdown": "Hello, I could not read the SunnyBrook's new version dataset, however, I found the older version of this dataset [here](https://sourceforge.net/projects/cardiac-mr/files/) that is easily readable.",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 106277,
      "author_name": "zhaoww",
      "author_url": "",
      "post_date": "01/29/2016 17:16:14",
      "content": "<p>Found it!\n<a href=\"https://gist.github.com/ajsander/b65061d12f50de3cef5d#file-fcn_tutorial-ipynb\">https://gist.github.com/ajsander/b65061d12f50de3cef5d#file-fcn_tutorial-ipynb</a></p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 329504,
      "author_name": "gavinseeg",
      "author_url": "",
      "post_date": "05/16/2018 15:53:22",
      "content": "<p>Thanks but it seems the data is now renamed such that the DICOM files don't follow the 'IM-' convention</p>",
      "votes": null,
      "replies": [
        {
          "id": 368775,
          "author_name": "vivektreddy",
          "author_url": "",
          "post_date": "08/10/2018 19:19:28",
          "content": "<p>Hey Gavin.  Where you able to find a way to solve the changed naming convention for the DICOM files now that they have changed?  Can you please share if you have?  I have been stuck for some time.  </p>",
          "votes": null,
          "replies": []
        }
      ]
    },
    {
      "id": 353123,
      "author_name": "leoanimal",
      "author_url": "",
      "post_date": "07/06/2018 01:12:45",
      "content": "<p>Hello, I want to know if you have solved this problem. If you have solved it, can you share the solution? </p>",
      "votes": null,
      "replies": [
        {
          "id": 368776,
          "author_name": "vivektreddy",
          "author_url": "",
          "post_date": "08/10/2018 19:20:14",
          "content": "<p>Can you please share if you were you able to find a way to solve this problem?  I would greatly appreciate it.  </p>",
          "votes": null,
          "replies": []
        }
      ]
    },
    {
      "id": 455101,
      "author_name": "arianjafari",
      "author_url": "",
      "post_date": "01/13/2019 01:35:18",
      "content": "<p>hey Zhao,</p>\n\n<p>Have you finally found out how to find the corresponding dicom file for each contour? </p>\n\n<p>Thanks</p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 903850,
      "author_name": "behnamkvl",
      "author_url": "",
      "post_date": "06/27/2020 06:50:06",
      "content": "<p>Hello, I could not read the SunnyBrook's new version dataset, however, I found the older version of this dataset <a href=\"https://sourceforge.net/projects/cardiac-mr/files/\">here</a> that is easily readable. </p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "106242": "Hi,\r\n  I downloaded DICOM images and manual contours from this page [http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/][1].\r\n\r\n  For DICOM images, each patient has a folder which contains about 100 sub-folders named like this \"1.32_29sSOG9riFiQfXpHFLC6Zj453OlBWiLWSxWS5LSwJbcf7neGtrQ_iHpfyZ7_KVjcy_-x_-y_64_64_8\", and the DICOM images are in these sub-folders.\r\n\r\n  For manual contours, each patient has about 30~40 text files which have contour coordinates in them, and their file names are like this \"IM-0001-0047-icontour-manual.txt\".\r\n\r\n  Does anyone know the relation between them? Which contour is for which DICOM files? What does 0001 and 0047 mean in the file name?\r\n  Did I miss something? Is there a guide for Sunnybrook data?\r\n\r\nThanks! \r\n\r\n\r\n  [1]: http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/",
    "106277": "Found it!\r\nhttps://gist.github.com/ajsander/b65061d12f50de3cef5d#file-fcn_tutorial-ipynb",
    "329504": "Thanks but it seems the data is now renamed such that the DICOM files don't follow the 'IM-' convention",
    "353123": "Hello, I want to know if you have solved this problem. If you have solved it, can you share the solution?",
    "368775": "Hey Gavin.  Where you able to find a way to solve the changed naming convention for the DICOM files now that they have changed?  Can you please share if you have?  I have been stuck for some time.",
    "368776": "Can you please share if you were you able to find a way to solve this problem?  I would greatly appreciate it.",
    "455101": "hey Zhao,\n\nHave you finally found out how to find the corresponding dicom file for each contour? \n\nThanks",
    "903850": "Hello, I could not read the SunnyBrook's new version dataset, however, I found the older version of this dataset [here](https://sourceforge.net/projects/cardiac-mr/files/) that is easily readable."
  },
  "source": "meta"
}