{ "id": 276371, "title": "Synchronized MRI Scans Animations with TorchIO", "url": "/competitions/rsna-miccai-brain-tumor-radiogenomic-classification/discussion/276371", "author_name": "", "post_date": "2021-10-04T13:27:20.346067900Z", "votes": 13, "comment_count": 2, "views": 0, "content": "

I shared this notebook: https://www.kaggle.com/ohbewise/s4p1-collage

\n

It creates awesome synchronized plots/pngs of the middle slice of all four types of the MRI scans like this:
\n\"synchronized

\n

Next, I created 12 synchronized side-by-side plot videos / animations. I think this looks really cool. Created with this notebook: https://www.kaggle.com/ohbewise/synchronized-mri-animations-flair-t1w-t1wce-t2w and dataset: https://www.kaggle.com/ohbewise/synchronized-mri-flair-t1w-t1wce-t2w-animations
\n\"\"

\n

Next, I will be also removing all plot titles, subtitles, and x/y scaling - smashing all 12 images together by cropping out the extra pixels, so they can be used in 2D machine learning.

", "messages": [ { "id": "1533920", "postDate": "10/04/2021 13:27:20", "content": "

I shared this notebook: https://www.kaggle.com/ohbewise/s4p1-collage

\n

It creates awesome synchronized plots/pngs of the middle slice of all four types of the MRI scans like this:
\n\"synchronized

\n

Next, I created 12 synchronized side-by-side plot videos / animations. I think this looks really cool. Created with this notebook: https://www.kaggle.com/ohbewise/synchronized-mri-animations-flair-t1w-t1wce-t2w and dataset: https://www.kaggle.com/ohbewise/synchronized-mri-flair-t1w-t1wce-t2w-animations
\n\"\"

\n

Next, I will be also removing all plot titles, subtitles, and x/y scaling - smashing all 12 images together by cropping out the extra pixels, so they can be used in 2D machine learning.

", "rawMarkdown": "I shared this notebook: https://www.kaggle.com/ohbewise/s4p1-collage\n\nIt creates awesome synchronized plots/pngs of the middle slice of all four types of the MRI scans like this:\n![synchronized plots](https://user-images.githubusercontent.com/775607/135853998-67b0348c-bed0-42c0-84d1-1b0d872cc583.png)\n\nNext, I created 12 synchronized side-by-side plot videos / animations. I think this looks really cool. Created with this notebook: https://www.kaggle.com/ohbewise/synchronized-mri-animations-flair-t1w-t1wce-t2w and dataset: https://www.kaggle.com/ohbewise/synchronized-mri-flair-t1w-t1wce-t2w-animations \n![](https://storage.googleapis.com/kagglesdsdata/datasets/1628949/2676982/processed/00688/gif/00688.gif?X-Goog-Algorithm=GOOG4-RSA-SHA256&X-Goog-Credential=databundle-worker-v2%40kaggle-161607.iam.gserviceaccount.com%2F20211012%2Fauto%2Fstorage%2Fgoog4_request&X-Goog-Date=20211012T021308Z&X-Goog-Expires=345599&X-Goog-SignedHeaders=host&X-Goog-Signature=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)\n\nNext, I will be also removing all plot titles, subtitles, and x/y scaling - smashing all 12 images together by cropping out the extra pixels, so they can be used in 2D machine learning.", "votes": null }, { "id": "1534045", "postDate": "10/04/2021 14:54:12", "content": "

I'm looking forward to seeing the synchronized animations :) Good job and good luck!

", "rawMarkdown": "I'm looking forward to seeing the synchronized animations :) Good job and good luck!", "votes": null }, { "id": "1534491", "postDate": "10/05/2021 01:09:07", "content": "

ton of coding… then finding a library contains all I need for MRI
\njust a wonderful library Thx @fepegar πŸ˜‰πŸ‘

", "rawMarkdown": "ton of coding... then finding a library contains all I need for MRI\njust a wonderful library Thx @fepegar πŸ˜‰πŸ‘", "votes": null } ], "comments": [ { "id": 1534045, "author_name": "fepegar", "author_url": "", "post_date": "10/04/2021 14:54:12", "content": "

I'm looking forward to seeing the synchronized animations :) Good job and good luck!

", "votes": null, "replies": [ { "id": 1534491, "author_name": "abdullrahmenseif", "author_url": "", "post_date": "10/05/2021 01:09:07", "content": "

ton of coding… then finding a library contains all I need for MRI
\njust a wonderful library Thx @fepegar πŸ˜‰πŸ‘

", "votes": null, "replies": [] } ] } ], "raw_markdown_by_id": { "1533920": "I shared this notebook: https://www.kaggle.com/ohbewise/s4p1-collage\n\nIt creates awesome synchronized plots/pngs of the middle slice of all four types of the MRI scans like this:\n![synchronized plots](https://user-images.githubusercontent.com/775607/135853998-67b0348c-bed0-42c0-84d1-1b0d872cc583.png)\n\nNext, I created 12 synchronized side-by-side plot videos / animations. I think this looks really cool. Created with this notebook: https://www.kaggle.com/ohbewise/synchronized-mri-animations-flair-t1w-t1wce-t2w and dataset: https://www.kaggle.com/ohbewise/synchronized-mri-flair-t1w-t1wce-t2w-animations \n![](https://storage.googleapis.com/kagglesdsdata/datasets/1628949/2676982/processed/00688/gif/00688.gif?X-Goog-Algorithm=GOOG4-RSA-SHA256&X-Goog-Credential=databundle-worker-v2%40kaggle-161607.iam.gserviceaccount.com%2F20211012%2Fauto%2Fstorage%2Fgoog4_request&X-Goog-Date=20211012T021308Z&X-Goog-Expires=345599&X-Goog-SignedHeaders=host&X-Goog-Signature=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)\n\nNext, I will be also removing all plot titles, subtitles, and x/y scaling - smashing all 12 images together by cropping out the extra pixels, so they can be used in 2D machine learning.", "1534045": "I'm looking forward to seeing the synchronized animations :) Good job and good luck!", "1534491": "ton of coding... then finding a library contains all I need for MRI\njust a wonderful library Thx @fepegar πŸ˜‰πŸ‘" }, "source": "meta" }