{
  "id": 266452,
  "title": "🔥How we can convert dataset in different modalities to 2D images?🔥",
  "url": "/competitions/rsna-miccai-brain-tumor-radiogenomic-classification/discussion/266452",
  "author_name": "MohammadHossein Givkashi",
  "post_date": "2021-08-19T07:27:05.639000",
  "votes": 3,
  "comment_count": 4,
  "views": 0,
  "content": "<p>I want to convert this dataset to 2D images and build images for mpMRI scans in different modalities. Do you know any resource about this?</p>",
  "messages": [
    {
      "id": 1480815,
      "postDate": "2021-08-19T07:27:05.640Z",
      "content": "<p>I want to convert this dataset to 2D images and build images for mpMRI scans in different modalities. Do you know any resource about this?</p>",
      "rawMarkdown": "I want to convert this dataset to 2D images and build images for mpMRI scans in different modalities. Do you know any resource about this?",
      "votes": 3
    },
    {
      "id": 1481563,
      "postDate": "2021-08-19T15:24:51.520Z",
      "content": "<p>Here is a PNG dataset and resizing into 256x256 2D png images and 36 slices per modality per patient: <a href=\"http://www.kaggle.com/dataset/d12293c3d1f77b9ff3448b8c7aa8b84312a0b8f15f1c4de9a6140ac7680c354a\" target=\"_blank\">www.kaggle.com/dataset/d12293c3d1f77b9ff3448b8c7aa8b84312a0b8f15f1c4de9a6140ac7680c354a</a></p>\n<p>You can find the Notebook on how to do this here: <a href=\"https://www.kaggle.com/smoschou55/dicom-to-2d-resized-axial-pngs-256x256-x36\" target=\"_blank\">https://www.kaggle.com/smoschou55/dicom-to-2d-resized-axial-pngs-256x256-x36</a></p>\n<p>hope this helps.</p>\n<p>PS files are also converted into AXIAL plane for all modalities and patients.</p>",
      "rawMarkdown": "Here is a PNG dataset and resizing into 256x256 2D png images and 36 slices per modality per patient: www.kaggle.com/dataset/d12293c3d1f77b9ff3448b8c7aa8b84312a0b8f15f1c4de9a6140ac7680c354a\n\nYou can find the Notebook on how to do this here: https://www.kaggle.com/smoschou55/dicom-to-2d-resized-axial-pngs-256x256-x36\n\nhope this helps.\n\nPS files are also converted into AXIAL plane for all modalities and patients.",
      "votes": 1,
      "replies": [
        {
          "id": 1482005,
          "postDate": "2021-08-19T19:41:23.383Z",
          "content": "<p>Thanks a lot.<br>\nHow i can combine this PNG pictures and create one picture  in PNG format ?<br>\nFor example combine 36 files in FLAIR folder ?</p>",
          "rawMarkdown": "Thanks a lot.\nHow i can combine this PNG pictures and create one picture  in PNG format ?\nFor example combine 36 files in FLAIR folder ?",
          "votes": 1
        },
        {
          "id": 1482986,
          "postDate": "2021-08-20T11:34:48.163Z",
          "content": "<p>Ah sorry, I misunderstood your question.</p>\n<p>I'm not sure what the best way to combine them is. <br>\nI think you would first need to align them in any case, which is what the notebook I shared does. Maybe once converting them to the same orientation one could average them or superpose them on top of each other?</p>",
          "rawMarkdown": "Ah sorry, I misunderstood your question.\n\nI'm not sure what the best way to combine them is. \nI think you would first need to align them in any case, which is what the notebook I shared does. Maybe once converting them to the same orientation one could average them or superpose them on top of each other?"
        },
        {
          "id": 1486264,
          "postDate": "2021-08-22T19:42:30.283Z",
          "rawMarkdown": "",
          "votes": -1,
          "isDeleted": true
        }
      ]
    }
  ],
  "comments": [
    {
      "id": 1481563,
      "author_name": "Sofia Moschou",
      "author_url": "",
      "post_date": "2021-08-19T15:24:51.520000",
      "content": "<p>Here is a PNG dataset and resizing into 256x256 2D png images and 36 slices per modality per patient: <a href=\"http://www.kaggle.com/dataset/d12293c3d1f77b9ff3448b8c7aa8b84312a0b8f15f1c4de9a6140ac7680c354a\" target=\"_blank\">www.kaggle.com/dataset/d12293c3d1f77b9ff3448b8c7aa8b84312a0b8f15f1c4de9a6140ac7680c354a</a></p>\n<p>You can find the Notebook on how to do this here: <a href=\"https://www.kaggle.com/smoschou55/dicom-to-2d-resized-axial-pngs-256x256-x36\" target=\"_blank\">https://www.kaggle.com/smoschou55/dicom-to-2d-resized-axial-pngs-256x256-x36</a></p>\n<p>hope this helps.</p>\n<p>PS files are also converted into AXIAL plane for all modalities and patients.</p>",
      "votes": 1,
      "replies": [
        {
          "id": 1482005,
          "author_name": "MohammadHossein Givkashi",
          "author_url": "",
          "post_date": "2021-08-19T19:41:23.383000",
          "content": "<p>Thanks a lot.<br>\nHow i can combine this PNG pictures and create one picture  in PNG format ?<br>\nFor example combine 36 files in FLAIR folder ?</p>",
          "votes": 1,
          "replies": []
        },
        {
          "id": 1482986,
          "author_name": "Sofia Moschou",
          "author_url": "",
          "post_date": "2021-08-20T11:34:48.163000",
          "content": "<p>Ah sorry, I misunderstood your question.</p>\n<p>I'm not sure what the best way to combine them is. <br>\nI think you would first need to align them in any case, which is what the notebook I shared does. Maybe once converting them to the same orientation one could average them or superpose them on top of each other?</p>",
          "votes": 0,
          "replies": []
        },
        {
          "id": 1486264,
          "author_name": "",
          "author_url": "",
          "post_date": "2021-08-22T19:42:30.283000",
          "content": "",
          "votes": -1,
          "replies": []
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "1480815": "I want to convert this dataset to 2D images and build images for mpMRI scans in different modalities. Do you know any resource about this?",
    "1481563": "Here is a PNG dataset and resizing into 256x256 2D png images and 36 slices per modality per patient: www.kaggle.com/dataset/d12293c3d1f77b9ff3448b8c7aa8b84312a0b8f15f1c4de9a6140ac7680c354a\n\nYou can find the Notebook on how to do this here: https://www.kaggle.com/smoschou55/dicom-to-2d-resized-axial-pngs-256x256-x36\n\nhope this helps.\n\nPS files are also converted into AXIAL plane for all modalities and patients."
  }
}