{
  "id": 341299,
  "title": "Study as 3D volume",
  "url": "/competitions/rsna-2022-cervical-spine-fracture-detection/discussion/341299",
  "author_name": "",
  "post_date": "2022-08-02T08:50:22.284421Z",
  "votes": 15,
  "comment_count": 3,
  "views": 0,
  "content": "<p>Hi, I think it would be useful to see each student in the context of the 3D, so I have converted the stacks of DICOM images to 3D volumes on normalized size and saved them as NumPy arrays so they can be easily loaded for anyone…</p>\n<p><a href=\"https://postimg.cc/mhTtW82r\" target=\"_blank\"><img src=\"https://i.postimg.cc/66vRRmkC/neck3-D-spl2.png\" alt=\"neck3-D-spl2.png\"></a></p>\n<p>Dataset:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/datasets/jirkaborovec/cervical-spine-fracture-detection-npz-3d-volumes\" target=\"_blank\">https://www.kaggle.com/datasets/jirkaborovec/cervical-spine-fracture-detection-npz-3d-volumes</a></p>\n</blockquote>\n<p>Conversion Kernel:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/code/jirkaborovec/spine-fracture-convert-dicom-imgs-3d-volume\" target=\"_blank\">https://www.kaggle.com/code/jirkaborovec/spine-fracture-convert-dicom-imgs-3d-volume</a></p>\n</blockquote>\n<p>Exploration Kernel:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/code/jirkaborovec/spine-fracture-eda-loading-dicom-3d-browse\" target=\"_blank\">https://www.kaggle.com/code/jirkaborovec/spine-fracture-eda-loading-dicom-3d-browse</a></p>\n</blockquote>\n<p>Baseline e2e:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/code/jirkaborovec/spine-fracclassif-baseline-lightning-monai-3d\" target=\"_blank\">https://www.kaggle.com/code/jirkaborovec/spine-fracclassif-baseline-lightning-monai-3d</a></p>\n</blockquote>",
  "messages": [
    {
      "id": "1881093",
      "postDate": "08/02/2022 08:50:22",
      "content": "<p>Hi, I think it would be useful to see each student in the context of the 3D, so I have converted the stacks of DICOM images to 3D volumes on normalized size and saved them as NumPy arrays so they can be easily loaded for anyone…</p>\n<p><a href=\"https://postimg.cc/mhTtW82r\" target=\"_blank\"><img src=\"https://i.postimg.cc/66vRRmkC/neck3-D-spl2.png\" alt=\"neck3-D-spl2.png\"></a></p>\n<p>Dataset:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/datasets/jirkaborovec/cervical-spine-fracture-detection-npz-3d-volumes\" target=\"_blank\">https://www.kaggle.com/datasets/jirkaborovec/cervical-spine-fracture-detection-npz-3d-volumes</a></p>\n</blockquote>\n<p>Conversion Kernel:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/code/jirkaborovec/spine-fracture-convert-dicom-imgs-3d-volume\" target=\"_blank\">https://www.kaggle.com/code/jirkaborovec/spine-fracture-convert-dicom-imgs-3d-volume</a></p>\n</blockquote>\n<p>Exploration Kernel:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/code/jirkaborovec/spine-fracture-eda-loading-dicom-3d-browse\" target=\"_blank\">https://www.kaggle.com/code/jirkaborovec/spine-fracture-eda-loading-dicom-3d-browse</a></p>\n</blockquote>\n<p>Baseline e2e:</p>\n<blockquote>\n  <p><a href=\"https://www.kaggle.com/code/jirkaborovec/spine-fracclassif-baseline-lightning-monai-3d\" target=\"_blank\">https://www.kaggle.com/code/jirkaborovec/spine-fracclassif-baseline-lightning-monai-3d</a></p>\n</blockquote>",
      "rawMarkdown": "Hi, I think it would be useful to see each student in the context of the 3D, so I have converted the stacks of DICOM images to 3D volumes on normalized size and saved them as NumPy arrays so they can be easily loaded for anyone...\n\n[![neck3-D-spl2.png](https://i.postimg.cc/66vRRmkC/neck3-D-spl2.png)](https://postimg.cc/mhTtW82r)\n\nDataset:\n>https://www.kaggle.com/datasets/jirkaborovec/cervical-spine-fracture-detection-npz-3d-volumes\n\nConversion Kernel:\n>https://www.kaggle.com/code/jirkaborovec/spine-fracture-convert-dicom-imgs-3d-volume\n\nExploration Kernel:\n>https://www.kaggle.com/code/jirkaborovec/spine-fracture-eda-loading-dicom-3d-browse\n\nBaseline e2e:\n>https://www.kaggle.com/code/jirkaborovec/spine-fracclassif-baseline-lightning-monai-3d",
      "votes": null
    },
    {
      "id": "1925474",
      "postDate": "09/04/2022 01:56:23",
      "content": "<p>Thanks! It's very Useful <a href=\"https://www.kaggle.com/jirkaborovec\" target=\"_blank\">@jirkaborovec</a> </p>",
      "rawMarkdown": "Thanks! It's very Useful @jirkaborovec",
      "votes": null
    },
    {
      "id": "1931592",
      "postDate": "09/08/2022 20:18:33",
      "content": "<p>Do the RED, GREEN and BLUE lines signify anything? As in some plane of reference or anything similar?</p>",
      "rawMarkdown": "Do the RED, GREEN and BLUE lines signify anything? As in some plane of reference or anything similar?",
      "votes": null
    },
    {
      "id": "1931637",
      "postDate": "09/08/2022 22:04:02",
      "content": "<p>Yes, the line is paired with the bounding box in another view, so it helps to understand what is view relation…</p>",
      "rawMarkdown": "Yes, the line is paired with the bounding box in another view, so it helps to understand what is view relation...",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 1925474,
      "author_name": "kalelpark",
      "author_url": "",
      "post_date": "09/04/2022 01:56:23",
      "content": "<p>Thanks! It's very Useful <a href=\"https://www.kaggle.com/jirkaborovec\" target=\"_blank\">@jirkaborovec</a> </p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 1931592,
      "author_name": "boidoingthings",
      "author_url": "",
      "post_date": "09/08/2022 20:18:33",
      "content": "<p>Do the RED, GREEN and BLUE lines signify anything? As in some plane of reference or anything similar?</p>",
      "votes": null,
      "replies": [
        {
          "id": 1931637,
          "author_name": "jirkaborovec",
          "author_url": "",
          "post_date": "09/08/2022 22:04:02",
          "content": "<p>Yes, the line is paired with the bounding box in another view, so it helps to understand what is view relation…</p>",
          "votes": null,
          "replies": []
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "1881093": "Hi, I think it would be useful to see each student in the context of the 3D, so I have converted the stacks of DICOM images to 3D volumes on normalized size and saved them as NumPy arrays so they can be easily loaded for anyone...\n\n[![neck3-D-spl2.png](https://i.postimg.cc/66vRRmkC/neck3-D-spl2.png)](https://postimg.cc/mhTtW82r)\n\nDataset:\n>https://www.kaggle.com/datasets/jirkaborovec/cervical-spine-fracture-detection-npz-3d-volumes\n\nConversion Kernel:\n>https://www.kaggle.com/code/jirkaborovec/spine-fracture-convert-dicom-imgs-3d-volume\n\nExploration Kernel:\n>https://www.kaggle.com/code/jirkaborovec/spine-fracture-eda-loading-dicom-3d-browse\n\nBaseline e2e:\n>https://www.kaggle.com/code/jirkaborovec/spine-fracclassif-baseline-lightning-monai-3d",
    "1925474": "Thanks! It's very Useful @jirkaborovec",
    "1931592": "Do the RED, GREEN and BLUE lines signify anything? As in some plane of reference or anything similar?",
    "1931637": "Yes, the line is paired with the bounding box in another view, so it helps to understand what is view relation..."
  },
  "source": "meta"
}