{ "id": 166141, "title": "Combining 2d slices into a single jpeg ", "url": "/competitions/osic-pulmonary-fibrosis-progression/discussion/166141", "author_name": "", "post_date": "2020-07-12T00:10:05.565891500Z", "votes": 3, "comment_count": 4, "views": 0, "content": "

I am planning to feed scan to cnn and see how it performs. As part of this exercise have https://www.kaggle.com/venkat555/osic-save-2d-slices-into-jpeg. The issue is that most of the slices have the following error\nAttributeError: 'FileDataset' object has no attribute 'ImagePositionPatient'

\n\n

If some one has done something similar , please let me know if i am missing something

", "messages": [ { "id": "925244", "postDate": "07/12/2020 00:10:05", "content": "

I am planning to feed scan to cnn and see how it performs. As part of this exercise have https://www.kaggle.com/venkat555/osic-save-2d-slices-into-jpeg. The issue is that most of the slices have the following error\nAttributeError: 'FileDataset' object has no attribute 'ImagePositionPatient'

\n\n

If some one has done something similar , please let me know if i am missing something

", "rawMarkdown": "I am planning to feed scan to cnn and see how it performs. As part of this exercise have https://www.kaggle.com/venkat555/osic-save-2d-slices-into-jpeg. The issue is that most of the slices have the following error\nAttributeError: 'FileDataset' object has no attribute 'ImagePositionPatient'\n\nIf some one has done something similar , please let me know if i am missing something", "votes": null }, { "id": "1009452", "postDate": "09/14/2020 02:44:34", "content": "

i'm having this error as well for 2 of the patients.

", "rawMarkdown": "i'm having this error as well for 2 of the patients.", "votes": null }, { "id": "1009907", "postDate": "09/14/2020 11:03:17", "content": "

Try and order those studies by using the number in the name of the dicom file. Most cases are in numerical order (although sometimes the numbers skip). I think the competition host stated somewhere that all test cases have ImagePositionPatient, but I haven't look for the reference. Best to assume it's not always available.

", "rawMarkdown": "Try and order those studies by using the number in the name of the dicom file. Most cases are in numerical order (although sometimes the numbers skip). I think the competition host stated somewhere that all test cases have ImagePositionPatient, but I haven't look for the reference. Best to assume it's not always available.", "votes": null }, { "id": "1031766", "postDate": "09/29/2020 17:13:39", "content": "

@richardepstein are the slices in CT report part of Same CT scan only or different differet Scan reports?
\nif 300 slices means patient has taken 300 CT reports ?

", "rawMarkdown": "richardepstein are the slices in CT report part of Same CT scan only or different differet Scan reports?\nif 300 slices means patient has taken 300 CT reports ?", "votes": null }, { "id": "1031811", "postDate": "09/29/2020 17:38:17", "content": "

A CT scan is taken as slices from neck to abdomen in a few seconds. So 300 slices is one scan through the chest. Like cutting a loaf of bread into slices. One report.

", "rawMarkdown": "A CT scan is taken as slices from neck to abdomen in a few seconds. So 300 slices is one scan through the chest. Like cutting a loaf of bread into slices. One report.", "votes": null } ], "comments": [ { "id": 1009452, "author_name": "yimacs", "author_url": "", "post_date": "09/14/2020 02:44:34", "content": "

i'm having this error as well for 2 of the patients.

", "votes": null, "replies": [] }, { "id": 1009907, "author_name": "richardepstein", "author_url": "", "post_date": "09/14/2020 11:03:17", "content": "

Try and order those studies by using the number in the name of the dicom file. Most cases are in numerical order (although sometimes the numbers skip). I think the competition host stated somewhere that all test cases have ImagePositionPatient, but I haven't look for the reference. Best to assume it's not always available.

", "votes": null, "replies": [ { "id": 1031766, "author_name": "jaideepvalani", "author_url": "", "post_date": "09/29/2020 17:13:39", "content": "

@richardepstein are the slices in CT report part of Same CT scan only or different differet Scan reports?
\nif 300 slices means patient has taken 300 CT reports ?

", "votes": null, "replies": [ { "id": 1031811, "author_name": "richardepstein", "author_url": "", "post_date": "09/29/2020 17:38:17", "content": "

A CT scan is taken as slices from neck to abdomen in a few seconds. So 300 slices is one scan through the chest. Like cutting a loaf of bread into slices. One report.

", "votes": null, "replies": [] } ] } ] } ], "raw_markdown_by_id": { "925244": "I am planning to feed scan to cnn and see how it performs. As part of this exercise have https://www.kaggle.com/venkat555/osic-save-2d-slices-into-jpeg. The issue is that most of the slices have the following error\nAttributeError: 'FileDataset' object has no attribute 'ImagePositionPatient'\n\nIf some one has done something similar , please let me know if i am missing something", "1009452": "i'm having this error as well for 2 of the patients.", "1009907": "Try and order those studies by using the number in the name of the dicom file. Most cases are in numerical order (although sometimes the numbers skip). I think the competition host stated somewhere that all test cases have ImagePositionPatient, but I haven't look for the reference. Best to assume it's not always available.", "1031766": "richardepstein are the slices in CT report part of Same CT scan only or different differet Scan reports?\nif 300 slices means patient has taken 300 CT reports ?", "1031811": "A CT scan is taken as slices from neck to abdomen in a few seconds. So 300 slices is one scan through the chest. Like cutting a loaf of bread into slices. One report." }, "source": "meta" }