{ "id": 452000, "title": "Useful Resources for this problem ", "url": "/competitions/open-problems-single-cell-perturbations/discussion/452000", "author_name": "", "post_date": "2023-10-31T12:35:47.044661900Z", "votes": 3, "comment_count": 3, "views": 0, "content": "

I have collected some useful information for domain knowledge about this competition. I hope this will help you a lot. Good Luck
\nSingle Cell Portal

\n", "messages": [ { "id": "2506612", "postDate": "10/31/2023 12:35:47", "content": "

I have collected some useful information for domain knowledge about this competition. I hope this will help you a lot. Good Luck
\nSingle Cell Portal

\n", "rawMarkdown": "I have collected some useful information for domain knowledge about this competition. I hope this will help you a lot. Good Luck \n\nSingle Cell Portal\n\n - https://singlecell.broadinstitute.org/ \n\nCell Painting website\n\n https://jump-cellpainting.broadinstitute.org/cell-painting \n\nLINCS L1000 website \n\nhttps://lincsproject.org/LINCS/tools/workflows/find-the-best-place-to-obtain-the-lincs-l1000-data \nCellNet website: http://texascellnet.com/ \n\nSingle Cell Analysis Forum \n\nhttps://singlecellsoftware.com/forum \n\nSingle Cell Twitter community\n\n https://twitter.com/scell_papers?lang=en \n\nSingle Cell Gene Expression Analysis by GenePattern\n\nhttps://www.rna-seqblog.com/genepattern-notebook-for-analysis-and-exploration-of-single-cell-transcriptomic-data/ \n\nSingle Cell RNA Sequencing (scRNA-seq) by FlowJo\n\nhttps://www.flowjo.com/learn/flowjo-university/seqgeq \n\nMachine Learning for Single Cell Data Analysis by Broad Institute\n\nhttps://broadinstitute.github.io/2020_scWorkshop/ \n\nSingle-Cell Analysis for Drug Discovery by Cellarity\n\nhttps://cellarity.com/news/cellarity-releases-novel-open-source-single-cell-dataset-and-invites-the-machine-learning-and-computational-biology-communities-to-develop-new-algorithms-capable-of-learning-fundamental-rules-of-cell-behavior.", "votes": null }, { "id": "2506616", "postDate": "10/31/2023 12:38:32", "content": "

Thank you for sharing. Could you recommend some of the best notebooks for competition learning?

", "rawMarkdown": "Thank you for sharing. Could you recommend some of the best notebooks for competition learning?", "votes": null }, { "id": "2506628", "postDate": "10/31/2023 12:46:06", "content": "

https://github.com/asncd/MIMOSCA

\n

https://www.biorxiv.org/content/10.1101/2022.07.31.502173v3.full

\n

https://github.com/theislab/scgen

", "rawMarkdown": "https://github.com/asncd/MIMOSCA \n\nhttps://www.biorxiv.org/content/10.1101/2022.07.31.502173v3.full \n\nhttps://github.com/theislab/scgen", "votes": null }, { "id": "2506630", "postDate": "10/31/2023 12:46:30", "content": "

You can take sample ideas from above links

", "rawMarkdown": "You can take sample ideas from above links", "votes": null } ], "comments": [ { "id": 2506616, "author_name": "", "author_url": "", "post_date": "10/31/2023 12:38:32", "content": "

Thank you for sharing. Could you recommend some of the best notebooks for competition learning?

", "votes": null, "replies": [ { "id": 2506628, "author_name": "kopyaesonephyo", "author_url": "", "post_date": "10/31/2023 12:46:06", "content": "

https://github.com/asncd/MIMOSCA

\n

https://www.biorxiv.org/content/10.1101/2022.07.31.502173v3.full

\n

https://github.com/theislab/scgen

", "votes": null, "replies": [] }, { "id": 2506630, "author_name": "kopyaesonephyo", "author_url": "", "post_date": "10/31/2023 12:46:30", "content": "

You can take sample ideas from above links

", "votes": null, "replies": [] } ] } ], "raw_markdown_by_id": { "2506612": "I have collected some useful information for domain knowledge about this competition. I hope this will help you a lot. Good Luck \n\nSingle Cell Portal\n\n - https://singlecell.broadinstitute.org/ \n\nCell Painting website\n\n https://jump-cellpainting.broadinstitute.org/cell-painting \n\nLINCS L1000 website \n\nhttps://lincsproject.org/LINCS/tools/workflows/find-the-best-place-to-obtain-the-lincs-l1000-data \nCellNet website: http://texascellnet.com/ \n\nSingle Cell Analysis Forum \n\nhttps://singlecellsoftware.com/forum \n\nSingle Cell Twitter community\n\n https://twitter.com/scell_papers?lang=en \n\nSingle Cell Gene Expression Analysis by GenePattern\n\nhttps://www.rna-seqblog.com/genepattern-notebook-for-analysis-and-exploration-of-single-cell-transcriptomic-data/ \n\nSingle Cell RNA Sequencing (scRNA-seq) by FlowJo\n\nhttps://www.flowjo.com/learn/flowjo-university/seqgeq \n\nMachine Learning for Single Cell Data Analysis by Broad Institute\n\nhttps://broadinstitute.github.io/2020_scWorkshop/ \n\nSingle-Cell Analysis for Drug Discovery by Cellarity\n\nhttps://cellarity.com/news/cellarity-releases-novel-open-source-single-cell-dataset-and-invites-the-machine-learning-and-computational-biology-communities-to-develop-new-algorithms-capable-of-learning-fundamental-rules-of-cell-behavior.", "2506616": "Thank you for sharing. Could you recommend some of the best notebooks for competition learning?", "2506628": "https://github.com/asncd/MIMOSCA \n\nhttps://www.biorxiv.org/content/10.1101/2022.07.31.502173v3.full \n\nhttps://github.com/theislab/scgen", "2506630": "You can take sample ideas from above links" }, "source": "meta" }