{"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"pygments_lexer":"ipython3","nbconvert_exporter":"python","version":"3.6.4","file_extension":".py","codemirror_mode":{"name":"ipython","version":3},"name":"python","mimetype":"text/x-python"}},"nbformat_minor":4,"nbformat":4,"cells":[{"cell_type":"code","source":"import numpy as np \nimport pandas as pd \nimport os\n\nadata_obs_meta = pd.read_csv(\"/kaggle/input/open-problems-single-cell-perturbations/adata_obs_meta.csv\")\nadata_obs_meta.head()","metadata":{"_uuid":"8f2839f25d086af736a60e9eeb907d3b93b6e0e5","_cell_guid":"b1076dfc-b9ad-4769-8c92-a6c4dae69d19","execution":{"iopub.status.busy":"2023-09-28T22:13:34.470695Z","iopub.execute_input":"2023-09-28T22:13:34.471753Z","iopub.status.idle":"2023-09-28T22:13:36.298898Z","shell.execute_reply.started":"2023-09-28T22:13:34.471711Z","shell.execute_reply":"2023-09-28T22:13:36.297272Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"de_train = pd.read_parquet('/kaggle/input/open-problems-single-cell-perturbations/de_train.parquet')\nde_train.head()\n\nid_map = pd.read_csv('/kaggle/input/open-problems-single-cell-perturbations/id_map.csv')\nid_map.head()\n\nmultiome_obs_meta = pd.read_csv('/kaggle/input/open-problems-single-cell-perturbations/multiome_obs_meta.csv')\nmultiome_obs_meta.head()\n\nmultiome_var = pd.read_csv('/kaggle/input/open-problems-single-cell-perturbations/multiome_var_meta.csv')\nmultiome_var.head()","metadata":{"execution":{"iopub.status.busy":"2023-09-28T22:14:34.263401Z","iopub.execute_input":"2023-09-28T22:14:34.263914Z","iopub.status.idle":"2023-09-28T22:14:37.574553Z","shell.execute_reply.started":"2023-09-28T22:14:34.263868Z","shell.execute_reply":"2023-09-28T22:14:37.573224Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"print(type(de_train))\nmem = de_train.memory_usage()\nmemsum = mem.sum() / 1024 / 1024 / 1024\nprint(f'\\n{mem}\\n\\n{memsum}\\n')\ndir(de_train)[:10]","metadata":{"execution":{"iopub.status.busy":"2023-09-28T22:22:34.169599Z","iopub.execute_input":"2023-09-28T22:22:34.169978Z","iopub.status.idle":"2023-09-28T22:22:34.397355Z","shell.execute_reply.started":"2023-09-28T22:22:34.169951Z","shell.execute_reply":"2023-09-28T22:22:34.396141Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"adata_train = pd.read_parquet('/kaggle/input/open-problems-single-cell-perturbations/adata_train.parquet')\nadata_train.head()","metadata":{"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"multiome_train = pd.read_parquet('/kaggle/input/open-problems-single-cell-perturbations/multiome_train.parquet')\nmultiome_train.head()","metadata":{},"execution_count":null,"outputs":[]}]}