{
  "id": 359809,
  "title": "Hematopoietic stem cell (HSC) differentiation figure",
  "url": "/competitions/open-problems-multimodal/discussion/359809",
  "author_name": "",
  "post_date": "2022-10-13T16:55:02.029222900Z",
  "votes": 8,
  "comment_count": 1,
  "views": 0,
  "content": "<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F7414683%2Fd9e932808129e4f882d00501a50771b9%2Fslide.png?generation=1665679803495432&amp;alt=media\" alt=\"\"></p>\n<p>HSC = Hematoploetic Stem Cell<br>\nEryP = Erythrocyte Progenitor<br>\nNeuP = Neutrophil Progenitor<br>\nMasP = Mast Cell Progenitor<br>\nMkP = Megakaryocyte Progenitor<br>\nBP = B-Cell Progenitor<br>\nMoP = Monocyte Progenitor</p>\n<p>ref: <a href=\"https://en.wikipedia.org/wiki/Hematopoietic_stem_cell\" target=\"_blank\">https://en.wikipedia.org/wiki/Hematopoietic_stem_cell</a></p>\n<p>HSC differentiate into wide variety cells.<br>\nI made a figure which show the location of each cell_type in the differentiation process.</p>",
  "messages": [
    {
      "id": "1985898",
      "postDate": "10/13/2022 16:55:02",
      "content": "<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F7414683%2Fd9e932808129e4f882d00501a50771b9%2Fslide.png?generation=1665679803495432&amp;alt=media\" alt=\"\"></p>\n<p>HSC = Hematoploetic Stem Cell<br>\nEryP = Erythrocyte Progenitor<br>\nNeuP = Neutrophil Progenitor<br>\nMasP = Mast Cell Progenitor<br>\nMkP = Megakaryocyte Progenitor<br>\nBP = B-Cell Progenitor<br>\nMoP = Monocyte Progenitor</p>\n<p>ref: <a href=\"https://en.wikipedia.org/wiki/Hematopoietic_stem_cell\" target=\"_blank\">https://en.wikipedia.org/wiki/Hematopoietic_stem_cell</a></p>\n<p>HSC differentiate into wide variety cells.<br>\nI made a figure which show the location of each cell_type in the differentiation process.</p>",
      "rawMarkdown": "![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F7414683%2Fd9e932808129e4f882d00501a50771b9%2Fslide.png?generation=1665679803495432&alt=media)\n\nHSC = Hematoploetic Stem Cell\nEryP = Erythrocyte Progenitor\nNeuP = Neutrophil Progenitor\nMasP = Mast Cell Progenitor\nMkP = Megakaryocyte Progenitor\nBP = B-Cell Progenitor\nMoP = Monocyte Progenitor\n\nref: https://en.wikipedia.org/wiki/Hematopoietic_stem_cell\n\nHSC differentiate into wide variety cells.\nI made a figure which show the location of each cell_type in the differentiation process.",
      "votes": null
    },
    {
      "id": "1986631",
      "postDate": "10/14/2022 07:34:16",
      "content": "<p>Nice, Upvoted. By the way - done similar thing:<br>\n<a href=\"https://www.kaggle.com/competitions/open-problems-multimodal/discussion/350314#1926964\" target=\"_blank\">https://www.kaggle.com/competitions/open-problems-multimodal/discussion/350314#1926964</a></p>\n<p>What is surprising that  UMAP(etc.)  on RNA-seq seems does not show that kind of tree structure.<br>\nIt seems  can be better seen with ATAC-seq<br>\n<a href=\"https://www.kaggle.com/code/alexandervc/mmscel-atac-seq-eda-01-dimred-visualizations?scriptVersionId=105765396&amp;cellId=17\" target=\"_blank\">https://www.kaggle.com/code/alexandervc/mmscel-atac-seq-eda-01-dimred-visualizations?scriptVersionId=105765396&amp;cellId=17</a> <br>\n<a href=\"https://www.biostars.org/p/9538656/#9538680\" target=\"_blank\">https://www.biostars.org/p/9538656/#9538680</a></p>",
      "rawMarkdown": "Nice, Upvoted. By the way - done similar thing:\nhttps://www.kaggle.com/competitions/open-problems-multimodal/discussion/350314#1926964\n\nWhat is surprising that  UMAP(etc.)  on RNA-seq seems does not show that kind of tree structure.\nIt seems  can be better seen with ATAC-seq\nhttps://www.kaggle.com/code/alexandervc/mmscel-atac-seq-eda-01-dimred-visualizations?scriptVersionId=105765396&cellId=17 \nhttps://www.biostars.org/p/9538656/#9538680",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 1986631,
      "author_name": "alexandervc",
      "author_url": "",
      "post_date": "10/14/2022 07:34:16",
      "content": "<p>Nice, Upvoted. By the way - done similar thing:<br>\n<a href=\"https://www.kaggle.com/competitions/open-problems-multimodal/discussion/350314#1926964\" target=\"_blank\">https://www.kaggle.com/competitions/open-problems-multimodal/discussion/350314#1926964</a></p>\n<p>What is surprising that  UMAP(etc.)  on RNA-seq seems does not show that kind of tree structure.<br>\nIt seems  can be better seen with ATAC-seq<br>\n<a href=\"https://www.kaggle.com/code/alexandervc/mmscel-atac-seq-eda-01-dimred-visualizations?scriptVersionId=105765396&amp;cellId=17\" target=\"_blank\">https://www.kaggle.com/code/alexandervc/mmscel-atac-seq-eda-01-dimred-visualizations?scriptVersionId=105765396&amp;cellId=17</a> <br>\n<a href=\"https://www.biostars.org/p/9538656/#9538680\" target=\"_blank\">https://www.biostars.org/p/9538656/#9538680</a></p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "1985898": "![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F7414683%2Fd9e932808129e4f882d00501a50771b9%2Fslide.png?generation=1665679803495432&alt=media)\n\nHSC = Hematoploetic Stem Cell\nEryP = Erythrocyte Progenitor\nNeuP = Neutrophil Progenitor\nMasP = Mast Cell Progenitor\nMkP = Megakaryocyte Progenitor\nBP = B-Cell Progenitor\nMoP = Monocyte Progenitor\n\nref: https://en.wikipedia.org/wiki/Hematopoietic_stem_cell\n\nHSC differentiate into wide variety cells.\nI made a figure which show the location of each cell_type in the differentiation process.",
    "1986631": "Nice, Upvoted. By the way - done similar thing:\nhttps://www.kaggle.com/competitions/open-problems-multimodal/discussion/350314#1926964\n\nWhat is surprising that  UMAP(etc.)  on RNA-seq seems does not show that kind of tree structure.\nIt seems  can be better seen with ATAC-seq\nhttps://www.kaggle.com/code/alexandervc/mmscel-atac-seq-eda-01-dimred-visualizations?scriptVersionId=105765396&cellId=17 \nhttps://www.biostars.org/p/9538656/#9538680"
  },
  "source": "meta"
}