{
  "id": 491073,
  "title": "Bioinformatics Competition is Back Again! Biopython. Bioinfo Material (Comps, Notebooks & Datasets) ",
  "url": "/competitions/leash-BELKA/discussion/491073",
  "author_name": "",
  "post_date": "2024-04-04T14:48:58.867267100Z",
  "votes": 46,
  "comment_count": 2,
  "views": 0,
  "content": "<h1>Bioinformatics on Kaggle. Biopython.</h1>\n<p><a href=\"https://storage.googleapis.com/kaggle-forum-message-attachments/2229862/19019/Introduction_to_protein_prediction-4.pdf\" target=\"_blank\">A  (not so) Quick Introduction to Protein Function Prediction</a> By Predrag Radivojac.  An amazing  \"document primarily intended for computer scientists as a rapid introduction to the area of protein function prediction.\"</p>\n<h1>KAGGLE COMPETITIONS:</h1>\n<p><a href=\"https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/402597\" target=\"_blank\">CAFA 5 Protein Function Prediction</a></p>\n<p><a href=\"https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/data\" target=\"_blank\">Stanford Ribonanza RNA Folding</a></p>\n<p><a href=\"https://www.kaggle.com/competitions/open-problems-multimodal\" target=\"_blank\">Open Problems - Multimodal Single-Cell Integration</a></p>\n<p><a href=\"https://www.kaggle.com/competitions/novozymes-enzyme-stability-prediction/overview\" target=\"_blank\">Novozymes Enzyme Stability Prediction</a></p>\n<p><a href=\"https://www.kaggle.com/datasets/alsgroup/end-als\" target=\"_blank\">End ALS Kaggle Challenge</a></p>\n<h1>KAGGLE NOTEBOOKS:</h1>\n<p><a href=\"https://www.kaggle.com/code/mylesoneill/getting-started-with-biopython\" target=\"_blank\">Getting Started with Biopython</a>  By Miles O'Neill</p>\n<p><a href=\"https://www.kaggle.com/code/alexandervc/gene-ontology-python-tutorial\" target=\"_blank\">Gene Ontology Python Tutorial</a>  By Alexander Chervov</p>\n<p><a href=\"https://www.kaggle.com/code/shtrausslearning/biopython-bioinformatics-basics\" target=\"_blank\">Biopython | Bioinformatics Basics</a> By Andrey Shtrauss</p>\n<p><a href=\"https://www.kaggle.com/code/shtrausslearning/bioconductor-bioinformatics-basics\" target=\"_blank\">Bioconductor | Bioinformatics Basics</a> By Andrey Shtrauss - R code</p>\n<p><a href=\"https://www.kaggle.com/code/paultimothymooney/starter-notebook-for-end-als-kaggle-challenge\" target=\"_blank\">Starter Notebook for END ALS (Kaggle Challenge)</a> By Paul T. Mooney</p>\n<p><a href=\"https://www.kaggle.com/code/rwilliams7653/als-challenge-task-1/notebook\" target=\"_blank\">ALS Challenge Task 1</a> By Randy Williams</p>\n<h1>KAGGLE DATASETS:</h1>\n<p><a href=\"https://www.kaggle.com/datasets/alexandervc/genes-information\" target=\"_blank\">Genes information</a> Dataset by Alexander Chervov</p>\n<p><a href=\"https://www.kaggle.com/datasets/shtrausslearning/biopython-genbank\" target=\"_blank\">Sequence GenBank</a> Dataset by Andrey Shtrauss</p>\n<h1>Discussion Topic:</h1>\n<p>Though we don't have communities anymore, the topic below include many Bioinformatics sources:</p>\n<p><a href=\"https://www.kaggle.com/general/203136\" target=\"_blank\">Please create \"Bioinformatics\" community</a>  By Alexander Chervov</p>\n<blockquote>\n  <p>In fact, I've just updated my previous topic.</p>\n</blockquote>",
  "messages": [
    {
      "id": "2735131",
      "postDate": "04/04/2024 14:48:58",
      "content": "<h1>Bioinformatics on Kaggle. Biopython.</h1>\n<p><a href=\"https://storage.googleapis.com/kaggle-forum-message-attachments/2229862/19019/Introduction_to_protein_prediction-4.pdf\" target=\"_blank\">A  (not so) Quick Introduction to Protein Function Prediction</a> By Predrag Radivojac.  An amazing  \"document primarily intended for computer scientists as a rapid introduction to the area of protein function prediction.\"</p>\n<h1>KAGGLE COMPETITIONS:</h1>\n<p><a href=\"https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/402597\" target=\"_blank\">CAFA 5 Protein Function Prediction</a></p>\n<p><a href=\"https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/data\" target=\"_blank\">Stanford Ribonanza RNA Folding</a></p>\n<p><a href=\"https://www.kaggle.com/competitions/open-problems-multimodal\" target=\"_blank\">Open Problems - Multimodal Single-Cell Integration</a></p>\n<p><a href=\"https://www.kaggle.com/competitions/novozymes-enzyme-stability-prediction/overview\" target=\"_blank\">Novozymes Enzyme Stability Prediction</a></p>\n<p><a href=\"https://www.kaggle.com/datasets/alsgroup/end-als\" target=\"_blank\">End ALS Kaggle Challenge</a></p>\n<h1>KAGGLE NOTEBOOKS:</h1>\n<p><a href=\"https://www.kaggle.com/code/mylesoneill/getting-started-with-biopython\" target=\"_blank\">Getting Started with Biopython</a>  By Miles O'Neill</p>\n<p><a href=\"https://www.kaggle.com/code/alexandervc/gene-ontology-python-tutorial\" target=\"_blank\">Gene Ontology Python Tutorial</a>  By Alexander Chervov</p>\n<p><a href=\"https://www.kaggle.com/code/shtrausslearning/biopython-bioinformatics-basics\" target=\"_blank\">Biopython | Bioinformatics Basics</a> By Andrey Shtrauss</p>\n<p><a href=\"https://www.kaggle.com/code/shtrausslearning/bioconductor-bioinformatics-basics\" target=\"_blank\">Bioconductor | Bioinformatics Basics</a> By Andrey Shtrauss - R code</p>\n<p><a href=\"https://www.kaggle.com/code/paultimothymooney/starter-notebook-for-end-als-kaggle-challenge\" target=\"_blank\">Starter Notebook for END ALS (Kaggle Challenge)</a> By Paul T. Mooney</p>\n<p><a href=\"https://www.kaggle.com/code/rwilliams7653/als-challenge-task-1/notebook\" target=\"_blank\">ALS Challenge Task 1</a> By Randy Williams</p>\n<h1>KAGGLE DATASETS:</h1>\n<p><a href=\"https://www.kaggle.com/datasets/alexandervc/genes-information\" target=\"_blank\">Genes information</a> Dataset by Alexander Chervov</p>\n<p><a href=\"https://www.kaggle.com/datasets/shtrausslearning/biopython-genbank\" target=\"_blank\">Sequence GenBank</a> Dataset by Andrey Shtrauss</p>\n<h1>Discussion Topic:</h1>\n<p>Though we don't have communities anymore, the topic below include many Bioinformatics sources:</p>\n<p><a href=\"https://www.kaggle.com/general/203136\" target=\"_blank\">Please create \"Bioinformatics\" community</a>  By Alexander Chervov</p>\n<blockquote>\n  <p>In fact, I've just updated my previous topic.</p>\n</blockquote>",
      "rawMarkdown": "#Bioinformatics on Kaggle. Biopython.\n\n[A  (not so) Quick Introduction to Protein Function Prediction](https://storage.googleapis.com/kaggle-forum-message-attachments/2229862/19019/Introduction_to_protein_prediction-4.pdf) By Predrag Radivojac.  An amazing  \"document primarily intended for computer scientists as a rapid introduction to the area of protein function prediction.\"\n\n#KAGGLE COMPETITIONS:\n\n[CAFA 5 Protein Function Prediction](https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/402597)\n\n[Stanford Ribonanza RNA Folding](https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/data)\n\n[Open Problems - Multimodal Single-Cell Integration](https://www.kaggle.com/competitions/open-problems-multimodal)\n\n[Novozymes Enzyme Stability Prediction](https://www.kaggle.com/competitions/novozymes-enzyme-stability-prediction/overview)\n\n[End ALS Kaggle Challenge](https://www.kaggle.com/datasets/alsgroup/end-als)\n\n#KAGGLE NOTEBOOKS:\n\n[Getting Started with Biopython](https://www.kaggle.com/code/mylesoneill/getting-started-with-biopython)  By Miles O'Neill\n\n[Gene Ontology Python Tutorial](https://www.kaggle.com/code/alexandervc/gene-ontology-python-tutorial)  By Alexander Chervov\n\n[Biopython | Bioinformatics Basics](https://www.kaggle.com/code/shtrausslearning/biopython-bioinformatics-basics) By Andrey Shtrauss\n\n\n[Bioconductor | Bioinformatics Basics](https://www.kaggle.com/code/shtrausslearning/bioconductor-bioinformatics-basics) By Andrey Shtrauss - R code\n\n[Starter Notebook for END ALS (Kaggle Challenge)](https://www.kaggle.com/code/paultimothymooney/starter-notebook-for-end-als-kaggle-challenge) By Paul T. Mooney\n\n[ALS Challenge Task 1](https://www.kaggle.com/code/rwilliams7653/als-challenge-task-1/notebook) By Randy Williams\n\n#KAGGLE DATASETS:\n\n[Genes information](https://www.kaggle.com/datasets/alexandervc/genes-information) Dataset by Alexander Chervov\n\n[Sequence GenBank](https://www.kaggle.com/datasets/shtrausslearning/biopython-genbank) Dataset by Andrey Shtrauss\n\n#Discussion Topic:\n\nThough we don't have communities anymore, the topic below include many Bioinformatics sources:\n\n[Please create \"Bioinformatics\" community](https://www.kaggle.com/general/203136)  By Alexander Chervov\n\n>In fact, I've just updated my previous topic.",
      "votes": null
    },
    {
      "id": "2744578",
      "postDate": "04/10/2024 02:15:10",
      "content": "<p>Thank you for these</p>",
      "rawMarkdown": "Thank you for these",
      "votes": null
    },
    {
      "id": "2766622",
      "postDate": "04/21/2024 19:48:23",
      "content": "<p>looks great thanks</p>",
      "rawMarkdown": "looks great thanks",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 2744578,
      "author_name": "anrenk",
      "author_url": "",
      "post_date": "04/10/2024 02:15:10",
      "content": "<p>Thank you for these</p>",
      "votes": null,
      "replies": []
    },
    {
      "id": 2766622,
      "author_name": "btarun13",
      "author_url": "",
      "post_date": "04/21/2024 19:48:23",
      "content": "<p>looks great thanks</p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "2735131": "#Bioinformatics on Kaggle. Biopython.\n\n[A  (not so) Quick Introduction to Protein Function Prediction](https://storage.googleapis.com/kaggle-forum-message-attachments/2229862/19019/Introduction_to_protein_prediction-4.pdf) By Predrag Radivojac.  An amazing  \"document primarily intended for computer scientists as a rapid introduction to the area of protein function prediction.\"\n\n#KAGGLE COMPETITIONS:\n\n[CAFA 5 Protein Function Prediction](https://www.kaggle.com/competitions/cafa-5-protein-function-prediction/discussion/402597)\n\n[Stanford Ribonanza RNA Folding](https://www.kaggle.com/competitions/stanford-ribonanza-rna-folding/data)\n\n[Open Problems - Multimodal Single-Cell Integration](https://www.kaggle.com/competitions/open-problems-multimodal)\n\n[Novozymes Enzyme Stability Prediction](https://www.kaggle.com/competitions/novozymes-enzyme-stability-prediction/overview)\n\n[End ALS Kaggle Challenge](https://www.kaggle.com/datasets/alsgroup/end-als)\n\n#KAGGLE NOTEBOOKS:\n\n[Getting Started with Biopython](https://www.kaggle.com/code/mylesoneill/getting-started-with-biopython)  By Miles O'Neill\n\n[Gene Ontology Python Tutorial](https://www.kaggle.com/code/alexandervc/gene-ontology-python-tutorial)  By Alexander Chervov\n\n[Biopython | Bioinformatics Basics](https://www.kaggle.com/code/shtrausslearning/biopython-bioinformatics-basics) By Andrey Shtrauss\n\n\n[Bioconductor | Bioinformatics Basics](https://www.kaggle.com/code/shtrausslearning/bioconductor-bioinformatics-basics) By Andrey Shtrauss - R code\n\n[Starter Notebook for END ALS (Kaggle Challenge)](https://www.kaggle.com/code/paultimothymooney/starter-notebook-for-end-als-kaggle-challenge) By Paul T. Mooney\n\n[ALS Challenge Task 1](https://www.kaggle.com/code/rwilliams7653/als-challenge-task-1/notebook) By Randy Williams\n\n#KAGGLE DATASETS:\n\n[Genes information](https://www.kaggle.com/datasets/alexandervc/genes-information) Dataset by Alexander Chervov\n\n[Sequence GenBank](https://www.kaggle.com/datasets/shtrausslearning/biopython-genbank) Dataset by Andrey Shtrauss\n\n#Discussion Topic:\n\nThough we don't have communities anymore, the topic below include many Bioinformatics sources:\n\n[Please create \"Bioinformatics\" community](https://www.kaggle.com/general/203136)  By Alexander Chervov\n\n>In fact, I've just updated my previous topic.",
    "2744578": "Thank you for these",
    "2766622": "looks great thanks"
  },
  "source": "meta"
}