\nOpen any row. Under the 'TISSUE' tab, you'll find 3-6 images for each organ which are very similar to the training images. They can be downloaded individually in their full resolution
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![\"\"](\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F2658675%2F45ad687f80701cd7af551c63ff1e9adb%2Fimg1.png?generation=1658043090550606&alt=media\")
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![\"\"](\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F2658675%2Fa20ca4696e80d5a070a58f1b4302d348%2Fimg3.png?generation=1658043245182171&alt=media\")
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![\"\"](\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F2658675%2F664814005bd0985576f0b934f4256bcc%2Fimg4.png?generation=1658043346879050&alt=media\")
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![\"\"](\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F2658675%2F8e9e29386b5df6398fda57a1010fc514%2Fimg5.png?generation=1658043389966605&alt=media\")
Go to this page - https://www.proteinatlas.org/search
\nOpen any row. Under the 'TISSUE' tab, you'll find 3-6 images for each organ which are very similar to the training images. They can be downloaded individually in their full resolution
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There are H&E stained WSI's as well for each organ in the same tab, unfortunately only a compressed version can be downloaded, it would have been great if we could download the full resolution images.
", "messages": [ { "id": "1858776", "postDate": "07/17/2022 07:37:40", "content": "Go to this page - https://www.proteinatlas.org/search
\nOpen any row. Under the 'TISSUE' tab, you'll find 3-6 images for each organ which are very similar to the training images. They can be downloaded individually in their full resolution
\n
\n
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There are H&E stained WSI's as well for each organ in the same tab, unfortunately only a compressed version can be downloaded, it would have been great if we could download the full resolution images.
", "rawMarkdown": "Go to this page - https://www.proteinatlas.org/search\nOpen any row. Under the 'TISSUE' tab, you'll find 3-6 images for each organ which are very similar to the training images. They can be downloaded individually in their full resolution\n\n\n\n\n\n\nThere are H&E stained WSI's as well for each organ in the same tab, unfortunately only a compressed version can be downloaded, it would have been great if we could download the full resolution images.", "votes": null }, { "id": "1859441", "postDate": "07/17/2022 16:28:38", "content": "Nice! Thank you.
\nWhat about HuBMAP? I was able to find only H&E stained kidney images (similar to those of the previous competition) but not other organs.
\nThere's also numerous images here, including organs that we need, though I couldn't find any metadata (resolution, thickness, etc)
\nhttps://gtexportal.org/home/histologyPage
There are only PAS stained kidney images on hubmap.
", "rawMarkdown": "There are only PAS stained kidney images on hubmap.", "votes": null }, { "id": "1859893", "postDate": "07/18/2022 04:05:35", "content": "I found 1-2 H&E stained WSI's for each organ here - https://www.proteinatlas.org/learn/dictionary. You can tile each WSI into multiple images for validation
", "rawMarkdown": "I found 1-2 H&E stained WSI's for each organ here - https://www.proteinatlas.org/learn/dictionary. You can tile each WSI into multiple images for validation", "votes": null }, { "id": "1863794", "postDate": "07/20/2022 14:10:12", "content": "Thank you.
\nI hope someone upload datasets.
it is time to learn a little HTTP hacking
\n![\"https://i.ibb.co/16V9nYK/Selection-065.png\"](\"https://i.ibb.co/16V9nYK/Selection-065.png\")
I'm not able to view the WSI's in GTEx Portal. Is it only me?
", "rawMarkdown": "I'm not able to view the WSI's in GTEx Portal. Is it only me?", "votes": null }, { "id": "1865749", "postDate": "07/22/2022 04:51:32", "content": "Same here. Last couple of days only black Images.
", "rawMarkdown": "Same here. Last couple of days only black Images.", "votes": null }, { "id": "1866606", "postDate": "07/22/2022 15:49:46", "content": "I have created a notebook that downloads the HE stained images from the HPA dictionary site: https://www.kaggle.com/code/clemchris/download-hpa-he-stained-full-tissue-sections/notebook
", "rawMarkdown": "I have created a notebook that downloads the HE stained images from the HPA dictionary site: https://www.kaggle.com/code/clemchris/download-hpa-he-stained-full-tissue-sections/notebook", "votes": null } ], "comments": [ { "id": 1859441, "author_name": "sakvaua", "author_url": "", "post_date": "07/17/2022 16:28:38", "content": "Nice! Thank you.
\nWhat about HuBMAP? I was able to find only H&E stained kidney images (similar to those of the previous competition) but not other organs.
\nThere's also numerous images here, including organs that we need, though I couldn't find any metadata (resolution, thickness, etc)
\nhttps://gtexportal.org/home/histologyPage
There are only PAS stained kidney images on hubmap.
", "votes": null, "replies": [] }, { "id": 1859893, "author_name": "samfc10", "author_url": "", "post_date": "07/18/2022 04:05:35", "content": "I found 1-2 H&E stained WSI's for each organ here - https://www.proteinatlas.org/learn/dictionary. You can tile each WSI into multiple images for validation
", "votes": null, "replies": [] }, { "id": 1863834, "author_name": "hengck23", "author_url": "", "post_date": "07/20/2022 14:31:14", "content": "it is time to learn a little HTTP hacking
\n
I'm not able to view the WSI's in GTEx Portal. Is it only me?
", "votes": null, "replies": [] }, { "id": 1865749, "author_name": "sakvaua", "author_url": "", "post_date": "07/22/2022 04:51:32", "content": "Same here. Last couple of days only black Images.
", "votes": null, "replies": [] }, { "id": 1866606, "author_name": "clemchris", "author_url": "", "post_date": "07/22/2022 15:49:46", "content": "I have created a notebook that downloads the HE stained images from the HPA dictionary site: https://www.kaggle.com/code/clemchris/download-hpa-he-stained-full-tissue-sections/notebook
", "votes": null, "replies": [] } ] }, { "id": 1863794, "author_name": "kojimar", "author_url": "", "post_date": "07/20/2022 14:10:12", "content": "Thank you.
\nI hope someone upload datasets.