{ "id": 332666, "title": "Welcome to the HuBMAP + HPA - Hacking the Human Body Competition!", "url": "/competitions/hubmap-organ-segmentation/discussion/332666", "author_name": "Yashvardhan Jain", "post_date": "2022-06-22T19:43:37.900000", "votes": 39, "comment_count": 17, "views": 0, "content": "

Welcome to the HuBMAP + HPA - Hacking the Human Body Competition!

\n

We are very much looking forward to the innovative solutions teams will generate to segment Functional Tissue Units in histology images of human tissue across 5 different organs.

\n

To help you get started, please check out the following notebooks:

\n

Biological Background Information: https://www.kaggle.com/yashvrdnjain/background-information

\n

Related previous Kaggle competition on Glomeruli Segmentation in Kidney
\nhttps://www.kaggle.com/competitions/hubmap-kidney-segmentation

\n

Competition results paper on biorxiv doi: 10.1101/2021.11.09.467810
\n\"Robust and generalizable segmentation of human functional tissue units\"

\n

Our team will be monitoring the discussion board and we look forward to hearing from you! Good luck and have fun!

\n

Yash
\nResearch Software Engineer - Machine Learning
\nIndiana University

", "messages": [ { "id": 1829664, "postDate": "2022-06-22T19:43:37.900Z", "content": "

Welcome to the HuBMAP + HPA - Hacking the Human Body Competition!

\n

We are very much looking forward to the innovative solutions teams will generate to segment Functional Tissue Units in histology images of human tissue across 5 different organs.

\n

To help you get started, please check out the following notebooks:

\n

Biological Background Information: https://www.kaggle.com/yashvrdnjain/background-information

\n

Related previous Kaggle competition on Glomeruli Segmentation in Kidney
\nhttps://www.kaggle.com/competitions/hubmap-kidney-segmentation

\n

Competition results paper on biorxiv doi: 10.1101/2021.11.09.467810
\n\"Robust and generalizable segmentation of human functional tissue units\"

\n

Our team will be monitoring the discussion board and we look forward to hearing from you! Good luck and have fun!

\n

Yash
\nResearch Software Engineer - Machine Learning
\nIndiana University

", "rawMarkdown": "Welcome to the HuBMAP + HPA - Hacking the Human Body Competition!\n\nWe are very much looking forward to the innovative solutions teams will generate to segment Functional Tissue Units in histology images of human tissue across 5 different organs.\n\nTo help you get started, please check out the following notebooks:\n\nBiological Background Information: https://www.kaggle.com/yashvrdnjain/background-information \n\nRelated previous Kaggle competition on Glomeruli Segmentation in Kidney\nhttps://www.kaggle.com/competitions/hubmap-kidney-segmentation \n\nCompetition results paper on biorxiv doi: 10.1101/2021.11.09.467810\n\"[Robust and generalizable segmentation of human functional tissue units](https://www.biorxiv.org/content/10.1101/2021.11.09.467810v1)\"\n\nOur team will be monitoring the discussion board and we look forward to hearing from you! Good luck and have fun!\n\nYash\nResearch Software Engineer - Machine Learning\nIndiana University \n", "votes": 39 }, { "id": 1832335, "postDate": "2022-06-25T00:42:02.653Z", "content": "

@yashvrdnjain

\n

I want to evaluate evaluate on other FTU and organ (those not in train and test) to shows additional results for \"Judges Prize.\" Can you suggest other FTU and organ? Thanks

", "rawMarkdown": "@yashvrdnjain \n\nI want to evaluate evaluate on other FTU and organ (those not in train and test) to shows additional results for \"Judges Prize.\" Can you suggest other FTU and organ? Thanks", "votes": 3 }, { "id": 1946838, "postDate": "2022-09-20T06:03:15.143Z", "content": "

@yashvrdnjain The competition rules timeline mentions the deadline of Sept 22 11:59pm UTC while the Judges Prizes section mentions deadline of Sept 21. Is there a separate deadline for the Judges Prizes?

", "rawMarkdown": "@yashvrdnjain The competition rules timeline mentions the deadline of Sept 22 11:59pm UTC while the Judges Prizes section mentions deadline of Sept 21. Is there a separate deadline for the Judges Prizes?", "votes": 1, "replies": [ { "id": 1947867, "postDate": "2022-09-20T17:25:53.030Z", "content": "

I checked with @yashvrdnjain and confirmed that the Judge's Prize deadline should be the same as the competition deadline; that page has been updated accordingly. Thanks for flagging this!

", "rawMarkdown": "I checked with @yashvrdnjain and confirmed that the Judge's Prize deadline should be the same as the competition deadline; that page has been updated accordingly. Thanks for flagging this!", "votes": 1 } ] }, { "id": 1906588, "postDate": "2022-08-20T02:59:22.850Z", "content": "

@yashvrdnjain I wanted to confirm if I could or could not use Nvidia Segformer from Hugging face. Context: this thread https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/343430
\nI am asking because I have been using https://huggingface.co/nvidia/segformer-b0-finetuned-cityscapes-1024-1024 for all my experiments and the license has been just recently changed by the hugging face Nvidia page. (I am using it when it was a diff. license) new to licence thing.

", "rawMarkdown": "@yashvrdnjain I wanted to confirm if I could or could not use Nvidia Segformer from Hugging face. Context: this thread https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/343430\nI am asking because I have been using https://huggingface.co/nvidia/segformer-b0-finetuned-cityscapes-1024-1024 for all my experiments and the license has been just recently changed by the hugging face Nvidia page. (I am using it when it was a diff. license) new to licence thing. ", "votes": 2 }, { "id": 1926486, "postDate": "2022-09-04T21:43:45.243Z", "content": "

How do you submit a notebook to the comp?

", "rawMarkdown": "How do you submit a notebook to the comp?", "replies": [ { "id": 1926775, "postDate": "2022-09-05T05:31:34.377Z", "content": "

just infer your trained weights, turn off the internet in your notebook and get the requirements through add data, and Sava & Run. then submit the predicted results

", "rawMarkdown": "just infer your trained weights, turn off the internet in your notebook and get the requirements through add data, and Sava & Run. then submit the predicted results" } ] }, { "id": 1921512, "postDate": "2022-08-31T22:15:26.480Z", "content": "

I just started kaggle and i got no idea on how to get the features

", "rawMarkdown": "I just started kaggle and i got no idea on how to get the features" }, { "id": 1905489, "postDate": "2022-08-19T05:20:28.863Z", "content": "

Thanks for sharing! Really really helpful!

", "rawMarkdown": "Thanks for sharing! Really really helpful!" }, { "id": 1899500, "postDate": "2022-08-15T09:50:11.917Z", "content": "

Dear Yashvardhan,

\n

Can you check https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/344276?

", "rawMarkdown": "Dear Yashvardhan,\n\nCan you check https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/344276?" }, { "id": 1868816, "postDate": "2022-07-24T08:53:41.310Z", "content": "

Nice resources to start and understand from. Thanks for sharing !!

", "rawMarkdown": "Nice resources to start and understand from. Thanks for sharing !!" }, { "id": 1915868, "postDate": "2022-08-27T12:49:47.520Z", "rawMarkdown": "", "isDeleted": true }, { "id": 1941600, "postDate": "2022-09-16T07:27:05.593Z", "content": "

Thanks for sharing!

", "rawMarkdown": "Thanks for sharing!" }, { "id": 1939550, "postDate": "2022-09-14T19:28:29.627Z", "content": "

Thanks for sharing!

", "rawMarkdown": "Thanks for sharing! " }, { "id": 1924363, "postDate": "2022-09-03T02:16:43.037Z", "content": "

Thank you so much! Really helpful!

", "rawMarkdown": "Thank you so much! Really helpful!" }, { "id": 1919611, "postDate": "2022-08-30T14:49:18.010Z", "content": "

Thanks for sharing! That'll be useful

", "rawMarkdown": "Thanks for sharing! That'll be useful" }, { "id": 1874058, "postDate": "2022-07-28T04:11:13.190Z", "content": "

Really Helpful. Thanks!

", "rawMarkdown": "Really Helpful. Thanks!" }, { "id": 1870629, "postDate": "2022-07-25T17:19:26.420Z", "content": "

Thanks for sharing !!

", "rawMarkdown": "Thanks for sharing !!" } ], "comments": [ { "id": 1832335, "author_name": "hengck23", "author_url": "", "post_date": "2022-06-25T00:42:02.653000", "content": "

@yashvrdnjain

\n

I want to evaluate evaluate on other FTU and organ (those not in train and test) to shows additional results for \"Judges Prize.\" Can you suggest other FTU and organ? Thanks

", "votes": 3, "replies": [] }, { "id": 1946838, "author_name": "Joseph Hillhouse", "author_url": "", "post_date": "2022-09-20T06:03:15.143000", "content": "

@yashvrdnjain The competition rules timeline mentions the deadline of Sept 22 11:59pm UTC while the Judges Prizes section mentions deadline of Sept 21. Is there a separate deadline for the Judges Prizes?

", "votes": 1, "replies": [ { "id": 1947867, "author_name": "Sohier Dane", "author_url": "", "post_date": "2022-09-20T17:25:53.030000", "content": "

I checked with @yashvrdnjain and confirmed that the Judge's Prize deadline should be the same as the competition deadline; that page has been updated accordingly. Thanks for flagging this!

", "votes": 1, "replies": [] } ] }, { "id": 1906588, "author_name": "Bibhabasu Mohapatra", "author_url": "", "post_date": "2022-08-20T02:59:22.850000", "content": "

@yashvrdnjain I wanted to confirm if I could or could not use Nvidia Segformer from Hugging face. Context: this thread https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/343430
\nI am asking because I have been using https://huggingface.co/nvidia/segformer-b0-finetuned-cityscapes-1024-1024 for all my experiments and the license has been just recently changed by the hugging face Nvidia page. (I am using it when it was a diff. license) new to licence thing.

", "votes": 2, "replies": [] }, { "id": 1926486, "author_name": "Abish Pius", "author_url": "", "post_date": "2022-09-04T21:43:45.243000", "content": "

How do you submit a notebook to the comp?

", "votes": 0, "replies": [ { "id": 1926775, "author_name": "Bibhabasu Mohapatra", "author_url": "", "post_date": "2022-09-05T05:31:34.377000", "content": "

just infer your trained weights, turn off the internet in your notebook and get the requirements through add data, and Sava & Run. then submit the predicted results

", "votes": 0, "replies": [] } ] }, { "id": 1921512, "author_name": "Ifeanyi Okonkwo", "author_url": "", "post_date": "2022-08-31T22:15:26.480000", "content": "

I just started kaggle and i got no idea on how to get the features

", "votes": 0, "replies": [] }, { "id": 1905489, "author_name": "pandadadada_zxf", "author_url": "", "post_date": "2022-08-19T05:20:28.863000", "content": "

Thanks for sharing! Really really helpful!

", "votes": 0, "replies": [] }, { "id": 1899500, "author_name": "Andrés Miguel Torrubia Sáez", "author_url": "", "post_date": "2022-08-15T09:50:11.917000", "content": "

Dear Yashvardhan,

\n

Can you check https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/344276?

", "votes": 0, "replies": [] }, { "id": 1868816, "author_name": "Sorous511", "author_url": "", "post_date": "2022-07-24T08:53:41.310000", "content": "

Nice resources to start and understand from. Thanks for sharing !!

", "votes": 0, "replies": [] }, { "id": 1915868, "author_name": "", "author_url": "", "post_date": "2022-08-27T12:49:47.520000", "content": "", "votes": 0, "replies": [] }, { "id": 1941600, "author_name": "SAVE", "author_url": "", "post_date": "2022-09-16T07:27:05.593000", "content": "

Thanks for sharing!

", "votes": 0, "replies": [] }, { "id": 1939550, "author_name": "Cai Chengfeng", "author_url": "", "post_date": "2022-09-14T19:28:29.627000", "content": "

Thanks for sharing!

", "votes": 0, "replies": [] }, { "id": 1924363, "author_name": "yjhoo", "author_url": "", "post_date": "2022-09-03T02:16:43.037000", "content": "

Thank you so much! Really helpful!

", "votes": 0, "replies": [] }, { "id": 1919611, "author_name": "Chris Deng1024", "author_url": "", "post_date": "2022-08-30T14:49:18.010000", "content": "

Thanks for sharing! That'll be useful

", "votes": 0, "replies": [] }, { "id": 1874058, "author_name": "olivepicker", "author_url": "", "post_date": "2022-07-28T04:11:13.190000", "content": "

Really Helpful. Thanks!

", "votes": 0, "replies": [] }, { "id": 1870629, "author_name": "Aleksey Kolychev", "author_url": "", "post_date": "2022-07-25T17:19:26.420000", "content": "

Thanks for sharing !!

", "votes": 0, "replies": [] } ], "raw_markdown_by_id": { "1829664": "Welcome to the HuBMAP + HPA - Hacking the Human Body Competition!\n\nWe are very much looking forward to the innovative solutions teams will generate to segment Functional Tissue Units in histology images of human tissue across 5 different organs.\n\nTo help you get started, please check out the following notebooks:\n\nBiological Background Information: https://www.kaggle.com/yashvrdnjain/background-information \n\nRelated previous Kaggle competition on Glomeruli Segmentation in Kidney\nhttps://www.kaggle.com/competitions/hubmap-kidney-segmentation \n\nCompetition results paper on biorxiv doi: 10.1101/2021.11.09.467810\n\"[Robust and generalizable segmentation of human functional tissue units](https://www.biorxiv.org/content/10.1101/2021.11.09.467810v1)\"\n\nOur team will be monitoring the discussion board and we look forward to hearing from you! Good luck and have fun!\n\nYash\nResearch Software Engineer - Machine Learning\nIndiana University \n", "1832335": "@yashvrdnjain \n\nI want to evaluate evaluate on other FTU and organ (those not in train and test) to shows additional results for \"Judges Prize.\" Can you suggest other FTU and organ? Thanks", "1946838": "@yashvrdnjain The competition rules timeline mentions the deadline of Sept 22 11:59pm UTC while the Judges Prizes section mentions deadline of Sept 21. Is there a separate deadline for the Judges Prizes?", "1906588": "@yashvrdnjain I wanted to confirm if I could or could not use Nvidia Segformer from Hugging face. Context: this thread https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/343430\nI am asking because I have been using https://huggingface.co/nvidia/segformer-b0-finetuned-cityscapes-1024-1024 for all my experiments and the license has been just recently changed by the hugging face Nvidia page. (I am using it when it was a diff. license) new to licence thing. ", "1926486": "How do you submit a notebook to the comp?", "1921512": "I just started kaggle and i got no idea on how to get the features", "1905489": "Thanks for sharing! Really really helpful!", "1899500": "Dear Yashvardhan,\n\nCan you check https://www.kaggle.com/competitions/hubmap-organ-segmentation/discussion/344276?", "1868816": "Nice resources to start and understand from. Thanks for sharing !!", "1915868": "", "1941600": "Thanks for sharing!", "1939550": "Thanks for sharing! ", "1924363": "Thank you so much! Really helpful!", "1919611": "Thanks for sharing! That'll be useful", "1874058": "Really Helpful. Thanks!", "1870629": "Thanks for sharing !!" } }