{
  "id": 223442,
  "title": "How is the hand-labeled glomeruli annotation is made?",
  "url": "/competitions/hubmap-kidney-segmentation/discussion/223442",
  "author_name": "",
  "post_date": "2021-03-03T20:40:08.822596Z",
  "votes": 5,
  "comment_count": 1,
  "views": 0,
  "content": "<p>Is there anyone also curious about this? </p>\n<p>The pathologists draw a circle on the histology image. What software do they use to draw a circle? And  how do they import the circle and make the annotation files? </p>\n<hr>\n<p>update: </p>\n<ol>\n<li>This post discussed that QuPath could be used to draw annotations: <a href=\"https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/229186\" target=\"_blank\">https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/229186</a></li>\n<li>This post discussed that \"yellow mask over the image can be drawn in windows paint. After loading the image, mask is where the pixel equals to (255, 255, 0)\" <a href=\"https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/227616\" target=\"_blank\">https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/227616</a></li>\n</ol>",
  "messages": [
    {
      "id": "1225694",
      "postDate": "03/03/2021 20:40:08",
      "content": "<p>Is there anyone also curious about this? </p>\n<p>The pathologists draw a circle on the histology image. What software do they use to draw a circle? And  how do they import the circle and make the annotation files? </p>\n<hr>\n<p>update: </p>\n<ol>\n<li>This post discussed that QuPath could be used to draw annotations: <a href=\"https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/229186\" target=\"_blank\">https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/229186</a></li>\n<li>This post discussed that \"yellow mask over the image can be drawn in windows paint. After loading the image, mask is where the pixel equals to (255, 255, 0)\" <a href=\"https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/227616\" target=\"_blank\">https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/227616</a></li>\n</ol>",
      "rawMarkdown": "Is there anyone also curious about this? \n\nThe pathologists draw a circle on the histology image. What software do they use to draw a circle? And  how do they import the circle and make the annotation files? \n\n-----\nupdate: \n1. This post discussed that QuPath could be used to draw annotations: https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/229186\n2. This post discussed that \"yellow mask over the image can be drawn in windows paint. After loading the image, mask is where the pixel equals to (255, 255, 0)\" https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/227616",
      "votes": null
    },
    {
      "id": "1226351",
      "postDate": "03/04/2021 13:23:20",
      "content": "<p>There are many open-source and proprietary softwares for this. I am not sure if the organizers have shared the one they use but I am curious as well.</p>",
      "rawMarkdown": "There are many open-source and proprietary softwares for this. I am not sure if the organizers have shared the one they use but I am curious as well.",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 1226351,
      "author_name": "yassinealouini",
      "author_url": "",
      "post_date": "03/04/2021 13:23:20",
      "content": "<p>There are many open-source and proprietary softwares for this. I am not sure if the organizers have shared the one they use but I am curious as well.</p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "1225694": "Is there anyone also curious about this? \n\nThe pathologists draw a circle on the histology image. What software do they use to draw a circle? And  how do they import the circle and make the annotation files? \n\n-----\nupdate: \n1. This post discussed that QuPath could be used to draw annotations: https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/229186\n2. This post discussed that \"yellow mask over the image can be drawn in windows paint. After loading the image, mask is where the pixel equals to (255, 255, 0)\" https://www.kaggle.com/c/hubmap-kidney-segmentation/discussion/227616",
    "1226351": "There are many open-source and proprietary softwares for this. I am not sure if the organizers have shared the one they use but I am curious as well."
  },
  "source": "meta"
}