{
  "id": 201569,
  "title": "Quiz : can you spot the missing or wrong annotation?",
  "url": "/competitions/hubmap-kidney-segmentation/discussion/201569",
  "author_name": "",
  "post_date": "2020-12-05T16:11:03.636303800Z",
  "votes": 15,
  "comment_count": 13,
  "views": 0,
  "content": "<p>I made a few quizzes for you to understand the data more.</p>\n<p>you should use these to decide how to augment the data, post/pre-processing, remove bias from train/test , label cleaning, estimate byes error (if you assume byes error = human error) etc …</p>\n<p>using perception similarity, you may want to think about metric learning, etc</p>\n<hr>\n<p>please see the questions below:</p>",
  "messages": [
    {
      "id": "1103085",
      "postDate": "12/05/2020 16:11:03",
      "content": "<p>I made a few quizzes for you to understand the data more.</p>\n<p>you should use these to decide how to augment the data, post/pre-processing, remove bias from train/test , label cleaning, estimate byes error (if you assume byes error = human error) etc …</p>\n<p>using perception similarity, you may want to think about metric learning, etc</p>\n<hr>\n<p>please see the questions below:</p>",
      "rawMarkdown": "I made a few quizzes for you to understand the data more.\n\nyou should use these to decide how to augment the data, post/pre-processing, remove bias from train/test , label cleaning, estimate byes error (if you assume byes error = human error) etc ...\n\nusing perception similarity, you may want to think about metric learning, etc\n\n---\n \nplease see the questions below:",
      "votes": null
    },
    {
      "id": "1103089",
      "postDate": "12/05/2020 16:13:05",
      "content": "<p>question.1</p>\n<p>the white dots are centers of given kaggle annotations in train dataset.<br>\nthere are three missing ones. can you spot them?<br>\n(answer are in the attachment)</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F21ea0caa4e1fed2f9f8a11fa4deeed8a%2FSelection_074.png?generation=1607184759886359&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "question.1\n\nthe white dots are centers of given kaggle annotations in train dataset.\nthere are three missing ones. can you spot them?\n(answer are in the attachment)\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F21ea0caa4e1fed2f9f8a11fa4deeed8a%2FSelection_074.png?generation=1607184759886359&alt=media)",
      "votes": null
    },
    {
      "id": "1103095",
      "postDate": "12/05/2020 16:22:27",
      "content": "<p>question.2 <br>\nThere is one missing annotation. where is it?</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fdc67a2f1425f2c4e7c6aff6744880d59%2FSelection_076.png?generation=1607185321196186&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "question.2 \nThere is one missing annotation. where is it?\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fdc67a2f1425f2c4e7c6aff6744880d59%2FSelection_076.png?generation=1607185321196186&alt=media)",
      "votes": null
    },
    {
      "id": "1103097",
      "postDate": "12/05/2020 16:23:10",
      "content": "<p>A1: Yep at top</p>",
      "rawMarkdown": "A1: Yep at top",
      "votes": null
    },
    {
      "id": "1103099",
      "postDate": "12/05/2020 16:26:50",
      "content": "<p>A2: I think at the bottom corner edges</p>",
      "rawMarkdown": "A2: I think at the bottom corner edges",
      "votes": null
    },
    {
      "id": "1103106",
      "postDate": "12/05/2020 16:34:03",
      "content": "<p>answer at the attached file (click Selection_075.png and Selection_077.png)</p>",
      "rawMarkdown": "answer at the attached file (click Selection_075.png and Selection_077.png)",
      "votes": null
    },
    {
      "id": "1103126",
      "postDate": "12/05/2020 16:41:41",
      "content": "<p>question.3<br>\none of the white dot annotations is wrong ( not consistent with kaggle ground truth)<br>\nwhich one is it?<br>\n(answer are in the attachment)</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fbdc5d3c0900cee83917ed3b167c1f619%2FSelection_078.png?generation=1607186478900923&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "question.3\none of the white dot annotations is wrong ( not consistent with kaggle ground truth)\nwhich one is it?\n(answer are in the attachment)\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fbdc5d3c0900cee83917ed3b167c1f619%2FSelection_078.png?generation=1607186478900923&alt=media)",
      "votes": null
    },
    {
      "id": "1103145",
      "postDate": "12/05/2020 16:52:25",
      "content": "<p>how many white dot annotations are wrong?<br>\n(answer are in the attachment)</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fc1d6d066a96328643313d2ca4ed85656%2FSelection_080.png?generation=1607187118619593&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "how many white dot annotations are wrong?\n(answer are in the attachment)\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fc1d6d066a96328643313d2ca4ed85656%2FSelection_080.png?generation=1607187118619593&alt=media)",
      "votes": null
    },
    {
      "id": "1103155",
      "postDate": "12/05/2020 17:04:49",
      "content": "<p>there are one wrong annotation and two missing ones. can you spot them?</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F4492b393a3870f28b40d22adb8988275%2FSelection_082.png?generation=1607187861165326&amp;alt=media\" alt=\"\"></p>",
      "rawMarkdown": "there are one wrong annotation and two missing ones. can you spot them?\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F4492b393a3870f28b40d22adb8988275%2FSelection_082.png?generation=1607187861165326&alt=media)",
      "votes": null
    },
    {
      "id": "1103159",
      "postDate": "12/05/2020 17:14:25",
      "content": "<p>Okay i will make a try.<br>\nBut have you solved the issue of allocating more memory in inference step</p>",
      "rawMarkdown": "Okay i will make a try.\nBut have you solved the issue of allocating more memory in inference step",
      "votes": null
    },
    {
      "id": "1103160",
      "postDate": "12/05/2020 17:17:05",
      "content": "<p>I estimate outlier (or human error annotation?)  in train is about 5%. if you assume average dice score per instance is about 0.95, then the best achievable score is about 0.95*0.95 = 0.9025</p>\n<p>as for the public test images, they are very close in terms of color and texture to the train images. <br>\nhence validation results should be closed the LB score.</p>\n<p>now i am only worried about the annotation in the following regions:</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fce5ec334db0ef086bb8281d92628de88%2FSelection_085.png?generation=1607189253421414&amp;alt=media\" alt=\"\"></p>\n<p>the concern is NOT if there are glomerulus or not, but rather if they are annotated or not.<br>\n(one may not annotate them because they are not useful)</p>\n<p>one can estimate the number of glomerulus using the density glomerulus of nearby region.<br>\nTo know if they are annotated, I can only think of probing the server. (e.g. check drop of LB score by removing any prediction in the detected  bright or dark region)</p>",
      "rawMarkdown": "I estimate outlier (or human error annotation?)  in train is about 5%. if you assume average dice score per instance is about 0.95, then the best achievable score is about 0.95*0.95 = 0.9025\n\nas for the public test images, they are very close in terms of color and texture to the train images. \nhence validation results should be closed the LB score.\n\nnow i am only worried about the annotation in the following regions:\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fce5ec334db0ef086bb8281d92628de88%2FSelection_085.png?generation=1607189253421414&alt=media)\n\nthe concern is NOT if there are glomerulus or not, but rather if they are annotated or not.\n(one may not annotate them because they are not useful)\n\none can estimate the number of glomerulus using the density glomerulus of nearby region.\nTo know if they are annotated, I can only think of probing the server. (e.g. check drop of LB score by removing any prediction in the detected  bright or dark region)",
      "votes": null
    },
    {
      "id": "1103164",
      "postDate": "12/05/2020 17:22:17",
      "content": "<p>not yet. My flow of work is:</p>\n<ol>\n<li>make a pipeline to make fast submission and experiment first</li>\n<li>estimate the final ranking score and shakeup </li>\n<li>find the most factor that affects results and verify it</li>\n<li>solve hardware and software issues (i.e. speed, memory, etc)</li>\n</ol>",
      "rawMarkdown": "not yet. My flow of work is:\n1.  make a pipeline to make fast submission and experiment first\n2. estimate the final ranking score and shakeup \n3. find the most factor that affects results and verify it\n4. solve hardware and software issues (i.e. speed, memory, etc)",
      "votes": null
    },
    {
      "id": "1116557",
      "postDate": "12/17/2020 09:11:08",
      "content": "<p>hi <a href=\"https://www.kaggle.com/hengck23\" target=\"_blank\">@hengck23</a>, how should I verify my answers are correct? I clicked the images above but nothing happened.</p>",
      "rawMarkdown": "hi @hengck23, how should I verify my answers are correct? I clicked the images above but nothing happened.",
      "votes": null
    },
    {
      "id": "1117072",
      "postDate": "12/17/2020 17:48:20",
      "content": "<p>click on link of the attached file, e.g. <a href=\"https://storage.googleapis.com/kaggle-forum-message-attachments/1103126/17617/Selection_079.png\" target=\"_blank\">https://storage.googleapis.com/kaggle-forum-message-attachments/1103126/17617/Selection_079.png</a></p>",
      "rawMarkdown": "click on link of the attached file, e.g. https://storage.googleapis.com/kaggle-forum-message-attachments/1103126/17617/Selection_079.png",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 1103089,
      "author_name": "hengck23",
      "author_url": "",
      "post_date": "12/05/2020 16:13:05",
      "content": "<p>question.1</p>\n<p>the white dots are centers of given kaggle annotations in train dataset.<br>\nthere are three missing ones. can you spot them?<br>\n(answer are in the attachment)</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F21ea0caa4e1fed2f9f8a11fa4deeed8a%2FSelection_074.png?generation=1607184759886359&amp;alt=media\" alt=\"\"></p>",
      "votes": null,
      "replies": [
        {
          "id": 1103095,
          "author_name": "hengck23",
          "author_url": "",
          "post_date": "12/05/2020 16:22:27",
          "content": "<p>question.2 <br>\nThere is one missing annotation. where is it?</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fdc67a2f1425f2c4e7c6aff6744880d59%2FSelection_076.png?generation=1607185321196186&amp;alt=media\" alt=\"\"></p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1103097,
          "author_name": "morizin",
          "author_url": "",
          "post_date": "12/05/2020 16:23:10",
          "content": "<p>A1: Yep at top</p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1103099,
          "author_name": "morizin",
          "author_url": "",
          "post_date": "12/05/2020 16:26:50",
          "content": "<p>A2: I think at the bottom corner edges</p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1103106,
          "author_name": "hengck23",
          "author_url": "",
          "post_date": "12/05/2020 16:34:03",
          "content": "<p>answer at the attached file (click Selection_075.png and Selection_077.png)</p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1103159,
          "author_name": "morizin",
          "author_url": "",
          "post_date": "12/05/2020 17:14:25",
          "content": "<p>Okay i will make a try.<br>\nBut have you solved the issue of allocating more memory in inference step</p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1103164,
          "author_name": "hengck23",
          "author_url": "",
          "post_date": "12/05/2020 17:22:17",
          "content": "<p>not yet. My flow of work is:</p>\n<ol>\n<li>make a pipeline to make fast submission and experiment first</li>\n<li>estimate the final ranking score and shakeup </li>\n<li>find the most factor that affects results and verify it</li>\n<li>solve hardware and software issues (i.e. speed, memory, etc)</li>\n</ol>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1116557,
          "author_name": "fuckvenkatraman",
          "author_url": "",
          "post_date": "12/17/2020 09:11:08",
          "content": "<p>hi <a href=\"https://www.kaggle.com/hengck23\" target=\"_blank\">@hengck23</a>, how should I verify my answers are correct? I clicked the images above but nothing happened.</p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1117072,
          "author_name": "hengck23",
          "author_url": "",
          "post_date": "12/17/2020 17:48:20",
          "content": "<p>click on link of the attached file, e.g. <a href=\"https://storage.googleapis.com/kaggle-forum-message-attachments/1103126/17617/Selection_079.png\" target=\"_blank\">https://storage.googleapis.com/kaggle-forum-message-attachments/1103126/17617/Selection_079.png</a></p>",
          "votes": null,
          "replies": []
        }
      ]
    },
    {
      "id": 1103126,
      "author_name": "hengck23",
      "author_url": "",
      "post_date": "12/05/2020 16:41:41",
      "content": "<p>question.3<br>\none of the white dot annotations is wrong ( not consistent with kaggle ground truth)<br>\nwhich one is it?<br>\n(answer are in the attachment)</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fbdc5d3c0900cee83917ed3b167c1f619%2FSelection_078.png?generation=1607186478900923&amp;alt=media\" alt=\"\"></p>",
      "votes": null,
      "replies": [
        {
          "id": 1103145,
          "author_name": "hengck23",
          "author_url": "",
          "post_date": "12/05/2020 16:52:25",
          "content": "<p>how many white dot annotations are wrong?<br>\n(answer are in the attachment)</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fc1d6d066a96328643313d2ca4ed85656%2FSelection_080.png?generation=1607187118619593&amp;alt=media\" alt=\"\"></p>",
          "votes": null,
          "replies": []
        },
        {
          "id": 1103155,
          "author_name": "hengck23",
          "author_url": "",
          "post_date": "12/05/2020 17:04:49",
          "content": "<p>there are one wrong annotation and two missing ones. can you spot them?</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F4492b393a3870f28b40d22adb8988275%2FSelection_082.png?generation=1607187861165326&amp;alt=media\" alt=\"\"></p>",
          "votes": null,
          "replies": []
        }
      ]
    },
    {
      "id": 1103160,
      "author_name": "hengck23",
      "author_url": "",
      "post_date": "12/05/2020 17:17:05",
      "content": "<p>I estimate outlier (or human error annotation?)  in train is about 5%. if you assume average dice score per instance is about 0.95, then the best achievable score is about 0.95*0.95 = 0.9025</p>\n<p>as for the public test images, they are very close in terms of color and texture to the train images. <br>\nhence validation results should be closed the LB score.</p>\n<p>now i am only worried about the annotation in the following regions:</p>\n<p><img src=\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fce5ec334db0ef086bb8281d92628de88%2FSelection_085.png?generation=1607189253421414&amp;alt=media\" alt=\"\"></p>\n<p>the concern is NOT if there are glomerulus or not, but rather if they are annotated or not.<br>\n(one may not annotate them because they are not useful)</p>\n<p>one can estimate the number of glomerulus using the density glomerulus of nearby region.<br>\nTo know if they are annotated, I can only think of probing the server. (e.g. check drop of LB score by removing any prediction in the detected  bright or dark region)</p>",
      "votes": null,
      "replies": []
    }
  ],
  "raw_markdown_by_id": {
    "1103085": "I made a few quizzes for you to understand the data more.\n\nyou should use these to decide how to augment the data, post/pre-processing, remove bias from train/test , label cleaning, estimate byes error (if you assume byes error = human error) etc ...\n\nusing perception similarity, you may want to think about metric learning, etc\n\n---\n \nplease see the questions below:",
    "1103089": "question.1\n\nthe white dots are centers of given kaggle annotations in train dataset.\nthere are three missing ones. can you spot them?\n(answer are in the attachment)\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F21ea0caa4e1fed2f9f8a11fa4deeed8a%2FSelection_074.png?generation=1607184759886359&alt=media)",
    "1103095": "question.2 \nThere is one missing annotation. where is it?\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fdc67a2f1425f2c4e7c6aff6744880d59%2FSelection_076.png?generation=1607185321196186&alt=media)",
    "1103097": "A1: Yep at top",
    "1103099": "A2: I think at the bottom corner edges",
    "1103106": "answer at the attached file (click Selection_075.png and Selection_077.png)",
    "1103126": "question.3\none of the white dot annotations is wrong ( not consistent with kaggle ground truth)\nwhich one is it?\n(answer are in the attachment)\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fbdc5d3c0900cee83917ed3b167c1f619%2FSelection_078.png?generation=1607186478900923&alt=media)",
    "1103145": "how many white dot annotations are wrong?\n(answer are in the attachment)\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fc1d6d066a96328643313d2ca4ed85656%2FSelection_080.png?generation=1607187118619593&alt=media)",
    "1103155": "there are one wrong annotation and two missing ones. can you spot them?\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2F4492b393a3870f28b40d22adb8988275%2FSelection_082.png?generation=1607187861165326&alt=media)",
    "1103159": "Okay i will make a try.\nBut have you solved the issue of allocating more memory in inference step",
    "1103160": "I estimate outlier (or human error annotation?)  in train is about 5%. if you assume average dice score per instance is about 0.95, then the best achievable score is about 0.95*0.95 = 0.9025\n\nas for the public test images, they are very close in terms of color and texture to the train images. \nhence validation results should be closed the LB score.\n\nnow i am only worried about the annotation in the following regions:\n\n![](https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F113660%2Fce5ec334db0ef086bb8281d92628de88%2FSelection_085.png?generation=1607189253421414&alt=media)\n\nthe concern is NOT if there are glomerulus or not, but rather if they are annotated or not.\n(one may not annotate them because they are not useful)\n\none can estimate the number of glomerulus using the density glomerulus of nearby region.\nTo know if they are annotated, I can only think of probing the server. (e.g. check drop of LB score by removing any prediction in the detected  bright or dark region)",
    "1103164": "not yet. My flow of work is:\n1.  make a pipeline to make fast submission and experiment first\n2. estimate the final ranking score and shakeup \n3. find the most factor that affects results and verify it\n4. solve hardware and software issues (i.e. speed, memory, etc)",
    "1116557": "hi @hengck23, how should I verify my answers are correct? I clicked the images above but nothing happened.",
    "1117072": "click on link of the attached file, e.g. https://storage.googleapis.com/kaggle-forum-message-attachments/1103126/17617/Selection_079.png"
  },
  "source": "meta"
}