First of all, we would like to give a warm thank you to all of you that participated in this challenge! ❤️
\nWe are really impressed by how well you solved our tricky problem and the breadth of your solutions. Wow! With these models, we are convinced that we can greatly improve the biological interpretation of the image data in the open access Human Protein Atlas database to further accelerate basic biological science world-wide.
\nWe're looking forward to diving into the details of your solutions, and would much appreciate if you're willing to share your Kaggle notebooks, either release your notebook publicly or add us as collaborators to your notebook (@emmalumpan @cwinsnes @weiouyang @lnhtrang @uaxelsson). Besides the notebooks, we also encourage you to share your full solution (including data preparation, training and validation parts) on Github. In your README.md file please include basic information about the team, final score of your solution, and detailed explanation as many of the writeups posted in the forum. Please also add hpa-challenge-2021 into the Topics field of your Github repo. This will make it easy to find all the code repo for our competition. Eventually all the tagged repo will appear here.
As announced in the challenge description, we aim to write an Analysis article for Nature Methods where we compare your approaches and discuss the outcome of the challenge. For this purpose, all teams are hereby invited to submit details about their solutions through this survey. Based on this survey, a few teams will be selected for participation as co-authors.
\nThe deadline to fill out the survey is May 26th. We will notify the selected teams on June 4th. (edit: selected teams were notified per email on June 4th)
\nThank you all for your work!
\nEmma and the Human Protein Atlas team
First of all, we would like to give a warm thank you to all of you that participated in this challenge! ❤️
\nWe are really impressed by how well you solved our tricky problem and the breadth of your solutions. Wow! With these models, we are convinced that we can greatly improve the biological interpretation of the image data in the open access Human Protein Atlas database to further accelerate basic biological science world-wide.
\nWe're looking forward to diving into the details of your solutions, and would much appreciate if you're willing to share your Kaggle notebooks, either release your notebook publicly or add us as collaborators to your notebook (@emmalumpan @cwinsnes @weiouyang @lnhtrang @uaxelsson). Besides the notebooks, we also encourage you to share your full solution (including data preparation, training and validation parts) on Github. In your README.md file please include basic information about the team, final score of your solution, and detailed explanation as many of the writeups posted in the forum. Please also add hpa-challenge-2021 into the Topics field of your Github repo. This will make it easy to find all the code repo for our competition. Eventually all the tagged repo will appear here.
As announced in the challenge description, we aim to write an Analysis article for Nature Methods where we compare your approaches and discuss the outcome of the challenge. For this purpose, all teams are hereby invited to submit details about their solutions through this survey. Based on this survey, a few teams will be selected for participation as co-authors.
\nThe deadline to fill out the survey is May 26th. We will notify the selected teams on June 4th. (edit: selected teams were notified per email on June 4th)
\nThank you all for your work!
\nEmma and the Human Protein Atlas team
@emmalumpan @cwinsnes @weiouyang @lnhtrang @uaxelsson
\nThanks very much for organizing this awesome competition.
\nCould you please tell, when and how will the teams be notified to participate as co-authors for Nature Methods article.
\nThanks
Have you received a notification now, I don’t have any news now
", "rawMarkdown": "Have you received a notification now, I don’t have any news now" }, { "id": 1343280, "postDate": "2021-06-10T06:26:49.183Z", "content": "Dear Sameed,
\nThank you for participating! We have notified the selected teams per email.
\nKind regards,
\nEmma
@emmalumpan How many teams were selected to be notified? No chance for 3th place
", "rawMarkdown": "@emmalumpan How many teams were selected to be notified? No chance for 3th place" }, { "id": 1343574, "postDate": "2021-06-10T09:26:00.493Z", "content": "I guess this means our team was not selected… This competition has been one of the most exciting professional challenges I've experienced and I really hoped to extend it by contributing on the paper, maybe we'll get another chance in 2 years :) Looking forward to read the paper, please let us know if we can contribute further in any way outside of co-authoring it!
", "rawMarkdown": "I guess this means our team was not selected... This competition has been one of the most exciting professional challenges I've experienced and I really hoped to extend it by contributing on the paper, maybe we'll get another chance in 2 years :) Looking forward to read the paper, please let us know if we can contribute further in any way outside of co-authoring it!", "votes": 2 } ] }, { "id": 1315511, "postDate": "2021-05-19T21:12:48.090Z", "content": "Thank you Emma and the team for organizing this great challenge!
\nRegarding the survey, I would like to know whether every member of a team needs to fill in the survey or one survey from a team would be enough.
", "rawMarkdown": "Thank you Emma and the team for organizing this great challenge!\n\nRegarding the survey, I would like to know whether every member of a team needs to fill in the survey or one survey from a team would be enough. ", "votes": 2, "replies": [ { "id": 1315895, "postDate": "2021-05-20T07:12:55.707Z", "content": "It is enough if one member per team fills out the survey.
", "rawMarkdown": "It is enough if one member per team fills out the survey.", "votes": 4 } ] }, { "id": 2293866, "postDate": "2023-06-09T14:47:30.473Z", "content": "Thanks very much for organizing this awesome competition.
", "rawMarkdown": "Thanks very much for organizing this awesome competition." }, { "id": 1326690, "postDate": "2021-05-28T15:57:16.933Z", "content": "\nAgain, thank you very much for organizing such a wonderful competition.
\nWe are so sorry, we missed this post and it was late to send out the Survey. We have just submitted the Survey and hope you will take a look at it.
", "rawMarkdown": "@emmalumpan @lnhtrang \n\nAgain, thank you very much for organizing such a wonderful competition.\n\nWe are so sorry, we missed this post and it was late to send out the Survey. We have just submitted the Survey and hope you will take a look at it.", "replies": [ { "id": 1327607, "postDate": "2021-05-29T12:59:37.117Z", "content": "Thanks for filling it out!
", "rawMarkdown": "Thanks for filling it out!", "votes": 1 } ] }, { "id": 1317032, "postDate": "2021-05-21T05:40:29Z", "content": "What Licence should we use for our GitHub repos?
", "rawMarkdown": "What Licence should we use for our GitHub repos?\n", "replies": [ { "id": 1317357, "postDate": "2021-05-21T11:05:43.533Z", "content": "Hi! you can use MIT license.
", "rawMarkdown": "Hi! you can use MIT license." }, { "id": 1322264, "postDate": "2021-05-25T10:13:38.473Z", "content": "Is Apache2 license good too?
", "rawMarkdown": "Is Apache2 license good too?" }, { "id": 1322303, "postDate": "2021-05-25T10:53:35.267Z", "content": "Yes Apache2 is good too.
", "rawMarkdown": "Yes Apache2 is good too.", "votes": 1 } ] }, { "id": 1315964, "postDate": "2021-05-20T08:05:50.117Z", "content": "Dear Prof. Emma Lundberg,
\nthank you once again for organizing the fascinating competition and for the great support and responsiveness by you and your team throughout the amazing 3 months!
\nRegarding the survey, the question What external data and external pre-trained networks did you use? is a single choice question, while I used both external data and the bestfitting's winning solution from the previous HPA competition. Could you please advise if I should enter option Other and describe it in plain text, or should I wait in case you'd consider changing the question type to multiple-choice? Thank you!
", "rawMarkdown": "Dear Prof. Emma Lundberg, \n\nthank you once again for organizing the fascinating competition and for the great support and responsiveness by you and your team throughout the amazing 3 months!\n\nRegarding the survey, the question *What external data and external pre-trained networks did you use?* is a single choice question, while I used both external data and the bestfitting's winning solution from the previous HPA competition. Could you please advise if I should enter option Other and describe it in plain text, or should I wait in case you'd consider changing the question type to multiple-choice? Thank you!", "replies": [ { "id": 1316214, "postDate": "2021-05-20T11:36:04.933Z", "content": "the question is updated
", "rawMarkdown": "the question is updated", "votes": 1 }, { "id": 1316230, "postDate": "2021-05-20T11:42:57.260Z", "content": "Dear Raman,
\nThank you for participating! It's really been a pleasure to plan and host this challenge.
\nWe have now updated that question to allow multi-choice answers. Thanks for notifying us.
\nBest,
\nEmma
@emmalumpan @cwinsnes @weiouyang @lnhtrang @uaxelsson
\nThanks very much for organizing this awesome competition.
\nCould you please tell, when and how will the teams be notified to participate as co-authors for Nature Methods article.
\nThanks
Have you received a notification now, I don’t have any news now
", "votes": 0, "replies": [] }, { "id": 1343280, "author_name": "Emma Lundberg", "author_url": "", "post_date": "2021-06-10T06:26:49.183000", "content": "Dear Sameed,
\nThank you for participating! We have notified the selected teams per email.
\nKind regards,
\nEmma
@emmalumpan How many teams were selected to be notified? No chance for 3th place
", "votes": 0, "replies": [] }, { "id": 1343574, "author_name": "Darek Kłeczek", "author_url": "", "post_date": "2021-06-10T09:26:00.493000", "content": "I guess this means our team was not selected… This competition has been one of the most exciting professional challenges I've experienced and I really hoped to extend it by contributing on the paper, maybe we'll get another chance in 2 years :) Looking forward to read the paper, please let us know if we can contribute further in any way outside of co-authoring it!
", "votes": 2, "replies": [] } ] }, { "id": 1315511, "author_name": "Ilya Makarov", "author_url": "", "post_date": "2021-05-19T21:12:48.090000", "content": "Thank you Emma and the team for organizing this great challenge!
\nRegarding the survey, I would like to know whether every member of a team needs to fill in the survey or one survey from a team would be enough.
", "votes": 2, "replies": [ { "id": 1315895, "author_name": "Emma Lundberg", "author_url": "", "post_date": "2021-05-20T07:12:55.707000", "content": "It is enough if one member per team fills out the survey.
", "votes": 4, "replies": [] } ] }, { "id": 2293866, "author_name": "Vedant Zope", "author_url": "", "post_date": "2023-06-09T14:47:30.473000", "content": "Thanks very much for organizing this awesome competition.
", "votes": 0, "replies": [] }, { "id": 1326690, "author_name": "Inoichan", "author_url": "", "post_date": "2021-05-28T15:57:16.933000", "content": "\nAgain, thank you very much for organizing such a wonderful competition.
\nWe are so sorry, we missed this post and it was late to send out the Survey. We have just submitted the Survey and hope you will take a look at it.
", "votes": 0, "replies": [ { "id": 1327607, "author_name": "Trang Le", "author_url": "", "post_date": "2021-05-29T12:59:37.117000", "content": "Thanks for filling it out!
", "votes": 1, "replies": [] } ] }, { "id": 1317032, "author_name": "wayfarer", "author_url": "", "post_date": "2021-05-21T05:40:29", "content": "What Licence should we use for our GitHub repos?
", "votes": 0, "replies": [ { "id": 1317357, "author_name": "Trang Le", "author_url": "", "post_date": "2021-05-21T11:05:43.533000", "content": "Hi! you can use MIT license.
", "votes": 0, "replies": [] }, { "id": 1322264, "author_name": "MPWARE", "author_url": "", "post_date": "2021-05-25T10:13:38.473000", "content": "Is Apache2 license good too?
", "votes": 0, "replies": [] }, { "id": 1322303, "author_name": "Emma Lundberg", "author_url": "", "post_date": "2021-05-25T10:53:35.267000", "content": "Yes Apache2 is good too.
", "votes": 1, "replies": [] } ] }, { "id": 1315964, "author_name": "Raman", "author_url": "", "post_date": "2021-05-20T08:05:50.117000", "content": "Dear Prof. Emma Lundberg,
\nthank you once again for organizing the fascinating competition and for the great support and responsiveness by you and your team throughout the amazing 3 months!
\nRegarding the survey, the question What external data and external pre-trained networks did you use? is a single choice question, while I used both external data and the bestfitting's winning solution from the previous HPA competition. Could you please advise if I should enter option Other and describe it in plain text, or should I wait in case you'd consider changing the question type to multiple-choice? Thank you!
", "votes": 0, "replies": [ { "id": 1316214, "author_name": "Trang Le", "author_url": "", "post_date": "2021-05-20T11:36:04.933000", "content": "the question is updated
", "votes": 1, "replies": [] }, { "id": 1316230, "author_name": "Emma Lundberg", "author_url": "", "post_date": "2021-05-20T11:42:57.260000", "content": "Dear Raman,
\nThank you for participating! It's really been a pleasure to plan and host this challenge.
\nWe have now updated that question to allow multi-choice answers. Thanks for notifying us.
\nBest,
\nEmma