{"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"pygments_lexer":"ipython3","nbconvert_exporter":"python","version":"3.6.4","file_extension":".py","codemirror_mode":{"name":"ipython","version":3},"name":"python","mimetype":"text/x-python"}},"nbformat_minor":4,"nbformat":4,"cells":[{"cell_type":"markdown","source":"# Import Libraries","metadata":{}},{"cell_type":"code","source":"import math, re, os, warnings\nimport tensorflow as tf\nimport numpy as np\nimport matplotlib.pyplot as plt\nfrom kaggle_datasets import KaggleDatasets\nfrom sklearn.metrics import f1_score, precision_score, recall_score, confusion_matrix\nAUTO = tf.data.experimental.AUTOTUNE\nprint(\"Tensorflow Version:- \", tf.__version__)\nwarnings.filterwarnings('ignore')","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:19.249793Z","iopub.execute_input":"2022-04-14T09:58:19.25046Z","iopub.status.idle":"2022-04-14T09:58:23.908629Z","shell.execute_reply.started":"2022-04-14T09:58:19.250421Z","shell.execute_reply":"2022-04-14T09:58:23.907908Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# TPU and GPU detection","metadata":{}},{"cell_type":"code","source":"try:\n    tpu = tf.distribute.cluster_resolver.TPUClusterResolver.connect() # TPU detection\n    strategy = tf.distribute.TPUStrategy(tpu)\nexcept ValueError: # detect GPUs\n    strategy = tf.distribute.MirroredStrategy() # for GPU\n\nprint(\"Number of accelerators: \", strategy.num_replicas_in_sync)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:23.910159Z","iopub.execute_input":"2022-04-14T09:58:23.910558Z","iopub.status.idle":"2022-04-14T09:58:26.126669Z","shell.execute_reply.started":"2022-04-14T09:58:23.910518Z","shell.execute_reply":"2022-04-14T09:58:26.125998Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"GCS_DS_PATH = KaggleDatasets().get_gcs_path()","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:26.127867Z","iopub.execute_input":"2022-04-14T09:58:26.12811Z","iopub.status.idle":"2022-04-14T09:58:27.174812Z","shell.execute_reply.started":"2022-04-14T09:58:26.128075Z","shell.execute_reply":"2022-04-14T09:58:27.173761Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Configuration","metadata":{}},{"cell_type":"code","source":"IMAGE_SIZE = [224, 224] # For tpu (224, 224)--for gpu\n\nEPOCHS = 12\nBATCH_SIZE = 16\n\nGCS_PATH_SELECT = {\n    192: GCS_DS_PATH + '/tfrecords-jpeg-192x192',\n    224: GCS_DS_PATH + '/tfrecords-jpeg-224x224',\n    331: GCS_DS_PATH + '/tfrecords-jpeg-331x331',\n    512: GCS_DS_PATH + '/tfrecords-jpeg-512x512'\n}\n\nGCS_PATH = GCS_PATH_SELECT[IMAGE_SIZE[0]]\n\nTRAINING_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/train/*.tfrec')\nVALIDATION_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/val/*.tfrec')\nTEST_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/test/*.tfrec') # predictions on this dataset should be submitted for the competition\n\nCLASSES = ['pink primrose',    'hard-leaved pocket orchid', 'canterbury bells', 'sweet pea',     'wild geranium',     'tiger lily',           'moon orchid',              'bird of paradise', 'monkshood',        'globe thistle',         # 00 - 09\n           'snapdragon',       \"colt's foot\",               'king protea',      'spear thistle', 'yellow iris',       'globe-flower',         'purple coneflower',        'peruvian lily',    'balloon flower',   'giant white arum lily', # 10 - 19\n           'fire lily',        'pincushion flower',         'fritillary',       'red ginger',    'grape hyacinth',    'corn poppy',           'prince of wales feathers', 'stemless gentian', 'artichoke',        'sweet william',         # 20 - 29\n           'carnation',        'garden phlox',              'love in the mist', 'cosmos',        'alpine sea holly',  'ruby-lipped cattleya', 'cape flower',              'great masterwort', 'siam tulip',       'lenten rose',           # 30 - 39\n           'barberton daisy',  'daffodil',                  'sword lily',       'poinsettia',    'bolero deep blue',  'wallflower',           'marigold',                 'buttercup',        'daisy',            'common dandelion',      # 40 - 49\n           'petunia',          'wild pansy',                'primula',          'sunflower',     'lilac hibiscus',    'bishop of llandaff',   'gaura',                    'geranium',         'orange dahlia',    'pink-yellow dahlia',    # 50 - 59\n           'cautleya spicata', 'japanese anemone',          'black-eyed susan', 'silverbush',    'californian poppy', 'osteospermum',         'spring crocus',            'iris',             'windflower',       'tree poppy',            # 60 - 69\n           'gazania',          'azalea',                    'water lily',       'rose',          'thorn apple',       'morning glory',        'passion flower',           'lotus',            'toad lily',        'anthurium',             # 70 - 79\n           'frangipani',       'clematis',                  'hibiscus',         'columbine',     'desert-rose',       'tree mallow',          'magnolia',                 'cyclamen ',        'watercress',       'canna lily',            # 80 - 89\n           'hippeastrum ',     'bee balm',                  'pink quill',       'foxglove',      'bougainvillea',     'camellia',             'mallow',                   'mexican petunia',  'bromelia',         'blanket flower',        # 90 - 99\n           'trumpet creeper',  'blackberry lily',           'common tulip',     'wild rose']                                                                                                                                               # 100 - 102","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:27.176949Z","iopub.execute_input":"2022-04-14T09:58:27.177175Z","iopub.status.idle":"2022-04-14T09:58:28.522402Z","shell.execute_reply.started":"2022-04-14T09:58:27.177141Z","shell.execute_reply":"2022-04-14T09:58:28.521665Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Visualization utilities","metadata":{}},{"cell_type":"code","source":"# numpy and matplotlib defaults\nnp.set_printoptions(threshold=15, linewidth=80)\n\ndef batch_to_numpy_images_and_labels(data):\n    images, labels = data\n    numpy_images = images.numpy()\n    numpy_labels = labels.numpy()\n    if numpy_labels.dtype == object: # binary string in this case, these are image ID strings\n        numpy_labels = [None for _ in enumerate(numpy_images)]\n    # If no labels, only image IDs, return None for labels (this is the case for test data)\n    return numpy_images, numpy_labels\n\ndef title_from_label_and_target(label, correct_label):\n    if correct_label is None:\n        return CLASSES[label], True\n    correct = (label == correct_label)\n    return \"{} [{}{}{}]\".format(CLASSES[label], 'OK' if correct else 'NO', u\"\\u2192\" if not correct else '',\n                                CLASSES[correct_label] if not correct else ''), correct\n\ndef display_one_flower(image, title, subplot, red=False, titlesize=16):\n    plt.subplot(*subplot)\n    plt.axis('off')\n    plt.imshow(image)\n    if len(title) > 0:\n        plt.title(title, fontsize=int(titlesize) if not red else int(titlesize/1.2), color='red' if red else 'black', fontdict={'verticalalignment':'center'}, pad=int(titlesize/1.5))\n    return (subplot[0], subplot[1], subplot[2]+1)\n    \ndef display_batch_of_images(databatch, predictions=None):\n    \"\"\"This will work with:\n    display_batch_of_images(images)\n    display_batch_of_images(images, predictions)\n    display_batch_of_images((images, labels))\n    display_batch_of_images((images, labels), predictions)\n    \"\"\"\n    # data\n    images, labels = batch_to_numpy_images_and_labels(databatch)\n    if labels is None:\n        labels = [None for _ in enumerate(images)]\n        \n    # auto-squaring: this will drop data that does not fit into square or square-ish rectangle\n    rows = int(math.sqrt(len(images)))\n    cols = len(images)//rows\n        \n    # size and spacing\n    FIGSIZE = 13.0\n    SPACING = 0.1\n    subplot=(rows,cols,1)\n    if rows < cols:\n        plt.figure(figsize=(FIGSIZE,FIGSIZE/cols*rows))\n    else:\n        plt.figure(figsize=(FIGSIZE/rows*cols,FIGSIZE))\n    \n    # display\n    for i, (image, label) in enumerate(zip(images[:rows*cols], labels[:rows*cols])):\n        title = '' if label is None else CLASSES[label]\n        correct = True\n        if predictions is not None:\n            title, correct = title_from_label_and_target(predictions[i], label)\n        dynamic_titlesize = FIGSIZE*SPACING/max(rows,cols)*40+3 # magic formula tested to work from 1x1 to 10x10 images\n        subplot = display_one_flower(image, title, subplot, not correct, titlesize=dynamic_titlesize)\n    \n    #layout\n    plt.tight_layout()\n    if label is None and predictions is None:\n        plt.subplots_adjust(wspace=0, hspace=0)\n    else:\n        plt.subplots_adjust(wspace=SPACING, hspace=SPACING)\n    plt.show()\n\ndef display_confusion_matrix(cmat, score, precision, recall):\n    plt.figure(figsize=(15,15))\n    ax = plt.gca()\n    ax.matshow(cmat, cmap='Reds')\n    ax.set_xticks(range(len(CLASSES)))\n    ax.set_xticklabels(CLASSES, fontdict={'fontsize': 7})\n    plt.setp(ax.get_xticklabels(), rotation=45, ha=\"left\", rotation_mode=\"anchor\")\n    ax.set_yticks(range(len(CLASSES)))\n    ax.set_yticklabels(CLASSES, fontdict={'fontsize': 7})\n    plt.setp(ax.get_yticklabels(), rotation=45, ha=\"right\", rotation_mode=\"anchor\")\n    titlestring = \"\"\n    if score is not None:\n        titlestring += 'f1 = {:.3f} '.format(score)\n    if precision is not None:\n        titlestring += '\\nprecision = {:.3f} '.format(precision)\n    if recall is not None:\n        titlestring += '\\nrecall = {:.3f} '.format(recall)\n    if len(titlestring) > 0:\n        ax.text(101, 1, titlestring, fontdict={'fontsize': 18, 'horizontalalignment':'right', 'verticalalignment':'top', 'color':'#804040'})\n    plt.show()\n    \ndef display_training_curves(training, validation, title, subplot):\n    if subplot%10==1: # set up the subplots on the first call\n        plt.subplots(figsize=(10,10), facecolor='#F0F0F0')\n        plt.tight_layout()\n    ax = plt.subplot(subplot)\n    ax.set_facecolor('#F8F8F8')\n    ax.plot(training)\n    ax.plot(validation)\n    ax.set_title('model '+ title)\n    ax.set_ylabel(title)\n    #ax.set_ylim(0.28,1.05)\n    ax.set_xlabel('epoch')\n    ax.legend(['train', 'valid.'])","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:28.525451Z","iopub.execute_input":"2022-04-14T09:58:28.52606Z","iopub.status.idle":"2022-04-14T09:58:28.551251Z","shell.execute_reply.started":"2022-04-14T09:58:28.526032Z","shell.execute_reply":"2022-04-14T09:58:28.550545Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Dataset","metadata":{}},{"cell_type":"code","source":"\ndef decode_image(image_data):\n    image = tf.image.decode_jpeg(image_data, channels=3)  # image format uint8 [0,255]\n    image = tf.reshape(image, [*IMAGE_SIZE, 3]) # explicit size needed for TPU\n    return image\n\ndef read_labeled_tfrecord(example):\n    LABELED_TFREC_FORMAT = {\n        \"image\": tf.io.FixedLenFeature([], tf.string), # tf.string means bytestring\n        \"class\": tf.io.FixedLenFeature([], tf.int64),  # shape [] means single element\n    }\n    example = tf.io.parse_single_example(example, LABELED_TFREC_FORMAT)\n    image = decode_image(example['image'])\n    label = tf.cast(example['class'], tf.int32)\n    return image, label # returns a dataset of (image, label) pairs\n\ndef read_unlabeled_tfrecord(example):\n    UNLABELED_TFREC_FORMAT = {\n        \"image\": tf.io.FixedLenFeature([], tf.string), # tf.string means bytestring\n        \"id\": tf.io.FixedLenFeature([], tf.string),  # shape [] means single element\n        # class is missing, this competitions's challenge is to predict flower classes for the test dataset\n    }\n    example = tf.io.parse_single_example(example, UNLABELED_TFREC_FORMAT)\n    image = decode_image(example['image'])\n    idnum = example['id']\n    return image, idnum # returns a dataset of image(s)\n\ndef load_dataset(filenames, labeled=True, ordered=False):\n    # Read from TFRecords. For optimal performance, reading from multiple files at once and\n    # disregarding data order. Order does not matter since we will be shuffling the data anyway.\n\n    ignore_order = tf.data.Options()\n    if not ordered:\n        ignore_order.experimental_deterministic = False # disable order, increase speed\n\n    dataset = tf.data.TFRecordDataset(filenames, num_parallel_reads=AUTO) # automatically interleaves reads from multiple files\n    dataset = dataset.with_options(ignore_order) # uses data as soon as it streams in, rather than in its original order\n    dataset = dataset.map(read_labeled_tfrecord if labeled else read_unlabeled_tfrecord, num_parallel_calls=AUTO)\n    # returns a dataset of (image, label) pairs if labeled=True or (image, id) pairs if labeled=False\n    return dataset\n\ndef data_augment(image, label):\n    # data augmentation. Thanks to the dataset.prefetch(AUTO) statement in the next function (below),\n    # this happens essentially for free on TPU. Data pipeline code is executed on the \"CPU\" part\n    # of the TPU while the TPU itself is computing gradients.\n    image = tf.image.random_flip_left_right(image)\n    #image = tf.image.random_saturation(image, 0, 2)\n    return image, label   \n\ndef get_training_dataset():\n    dataset = load_dataset(TRAINING_FILENAMES, labeled=True)\n    dataset = dataset.map(data_augment, num_parallel_calls=AUTO)\n    dataset = dataset.repeat() # the training dataset must repeat for several epochs\n    dataset = dataset.shuffle(2048)\n    dataset = dataset.batch(BATCH_SIZE)\n    dataset = dataset.prefetch(AUTO) # prefetch next batch while training (autotune prefetch buffer size)\n    return dataset\n\ndef get_validation_dataset(ordered=False):\n    dataset = load_dataset(VALIDATION_FILENAMES, labeled=True, ordered=ordered)\n    dataset = dataset.batch(BATCH_SIZE)\n    dataset = dataset.cache()\n    dataset = dataset.prefetch(AUTO) # prefetch next batch while training (autotune prefetch buffer size)\n    return dataset\n\ndef get_test_dataset(ordered=False):\n    dataset = load_dataset(TEST_FILENAMES, labeled=False, ordered=ordered)\n    dataset = dataset.batch(BATCH_SIZE)\n    dataset = dataset.prefetch(AUTO) # prefetch next batch while training (autotune prefetch buffer size)\n    return dataset\n\ndef count_data_items(filenames):\n    # the number of data items is written in the name of the .tfrec files, i.e. flowers00-230.tfrec = 230 data items\n    n = [int(re.compile(r\"-([0-9]*)\\.\").search(filename).group(1)) for filename in filenames]\n    return np.sum(n)\n\nNUM_TRAINING_IMAGES = count_data_items(TRAINING_FILENAMES)\nNUM_VALIDATION_IMAGES = count_data_items(VALIDATION_FILENAMES)\nNUM_TEST_IMAGES = count_data_items(TEST_FILENAMES)\nSTEPS_PER_EPOCH = NUM_TRAINING_IMAGES // BATCH_SIZE\nVALIDATION_STEPS = -(-NUM_VALIDATION_IMAGES // BATCH_SIZE) # The \"-(-//)\" trick rounds up instead of down :-)\nTEST_STEPS = -(-NUM_TEST_IMAGES // BATCH_SIZE)             # The \"-(-//)\" trick rounds up instead of down :-)\nprint('Dataset: {} training images, {} validation images, {} unlabeled test images'.format(NUM_TRAINING_IMAGES, NUM_VALIDATION_IMAGES, NUM_TEST_IMAGES))","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:28.552703Z","iopub.execute_input":"2022-04-14T09:58:28.552995Z","iopub.status.idle":"2022-04-14T09:58:28.573246Z","shell.execute_reply.started":"2022-04-14T09:58:28.552957Z","shell.execute_reply":"2022-04-14T09:58:28.572524Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Dataset visualizations","metadata":{}},{"cell_type":"code","source":"# data dump\nprint(\"Training data shapes:\")\nfor image, label in get_training_dataset().take(3):\n    print(image.numpy().shape, label.numpy().shape)\nprint(\"Training data label examples:\", label.numpy())\nprint(\"Validation data shapes:\")\nfor image, label in get_validation_dataset().take(3):\n    print(image.numpy().shape, label.numpy().shape)\nprint(\"Validation data label examples:\", label.numpy())\nprint(\"Test data shapes:\")\nfor image, idnum in get_test_dataset().take(3):\n    print(image.numpy().shape, idnum.numpy().shape)\nprint(\"Test data IDs:\", idnum.numpy().astype('U')) ","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:28.574996Z","iopub.execute_input":"2022-04-14T09:58:28.575593Z","iopub.status.idle":"2022-04-14T09:58:35.898718Z","shell.execute_reply.started":"2022-04-14T09:58:28.575555Z","shell.execute_reply":"2022-04-14T09:58:35.897997Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# Peek at training data\ntraining_dataset = get_training_dataset()\ntraining_dataset = training_dataset.unbatch().batch(20)\ntrain_batch = iter(training_dataset)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:35.899985Z","iopub.execute_input":"2022-04-14T09:58:35.900232Z","iopub.status.idle":"2022-04-14T09:58:35.950255Z","shell.execute_reply.started":"2022-04-14T09:58:35.900197Z","shell.execute_reply":"2022-04-14T09:58:35.949572Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"display_batch_of_images(next(train_batch))","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:35.951322Z","iopub.execute_input":"2022-04-14T09:58:35.951549Z","iopub.status.idle":"2022-04-14T09:58:39.369178Z","shell.execute_reply.started":"2022-04-14T09:58:35.951516Z","shell.execute_reply":"2022-04-14T09:58:39.367675Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# peer at test data\ntest_dataset = get_test_dataset()\ntest_dataset = test_dataset.unbatch().batch(20)\ntest_batch = iter(test_dataset)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:39.372435Z","iopub.execute_input":"2022-04-14T09:58:39.372659Z","iopub.status.idle":"2022-04-14T09:58:39.427462Z","shell.execute_reply.started":"2022-04-14T09:58:39.372629Z","shell.execute_reply":"2022-04-14T09:58:39.426775Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"display_batch_of_images(next(test_batch))","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:39.428945Z","iopub.execute_input":"2022-04-14T09:58:39.429234Z","iopub.status.idle":"2022-04-14T09:58:41.414325Z","shell.execute_reply.started":"2022-04-14T09:58:39.429196Z","shell.execute_reply":"2022-04-14T09:58:41.413673Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Model","metadata":{}},{"cell_type":"markdown","source":"# VGG16","metadata":{}},{"cell_type":"code","source":"with strategy.scope():\n    \n    img_adjust_layer = tf.keras.layers.Lambda(lambda data: tf.keras.applications.vgg16.preprocess_input(tf.cast(data, tf.float32)), input_shape=[*IMAGE_SIZE, 3])\n    pretrained_model = tf.keras.applications.VGG16(weights='imagenet', include_top=False)\n    \n    pretrained_model.trainable = False # False = transfer learning, True = fine-tuning\n    \n    model = tf.keras.Sequential([\n        img_adjust_layer,\n        pretrained_model,\n        tf.keras.layers.GlobalAveragePooling2D(),\n        tf.keras.layers.Dense(len(CLASSES), activation='softmax')\n    ])\n        \nmodel.compile(\n    optimizer='adam',\n    loss = 'sparse_categorical_crossentropy',\n    metrics=['sparse_categorical_accuracy'],\n    steps_per_execution=16\n)\nmodel.summary()","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:41.415675Z","iopub.execute_input":"2022-04-14T09:58:41.416088Z","iopub.status.idle":"2022-04-14T09:58:43.15041Z","shell.execute_reply.started":"2022-04-14T09:58:41.41605Z","shell.execute_reply":"2022-04-14T09:58:43.149664Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Training","metadata":{}},{"cell_type":"code","source":"history = model.fit(get_training_dataset(), steps_per_epoch=STEPS_PER_EPOCH, epochs=EPOCHS,\n                    validation_data=get_validation_dataset(), validation_steps=VALIDATION_STEPS)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T09:58:43.151702Z","iopub.execute_input":"2022-04-14T09:58:43.15196Z","iopub.status.idle":"2022-04-14T10:05:36.295412Z","shell.execute_reply.started":"2022-04-14T09:58:43.151926Z","shell.execute_reply":"2022-04-14T10:05:36.294701Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"display_training_curves(history.history['loss'], history.history['val_loss'], 'loss', 211)\ndisplay_training_curves(history.history['sparse_categorical_accuracy'], history.history['val_sparse_categorical_accuracy'], 'accuracy', 212)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:05:36.297201Z","iopub.execute_input":"2022-04-14T10:05:36.297499Z","iopub.status.idle":"2022-04-14T10:05:36.711381Z","shell.execute_reply.started":"2022-04-14T10:05:36.297449Z","shell.execute_reply":"2022-04-14T10:05:36.710695Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Confusion matrix","metadata":{}},{"cell_type":"code","source":"cmdataset = get_validation_dataset(ordered=True) # since we are splitting the dataset and iterating separately on images and labels, order matters.\nimages_ds = cmdataset.map(lambda image, label: image)\nlabels_ds = cmdataset.map(lambda image, label: label).unbatch()\ncm_correct_labels = next(iter(labels_ds.batch(NUM_VALIDATION_IMAGES))).numpy() # get everything as one batch\ncm_probabilities = model.predict(images_ds, steps=VALIDATION_STEPS)\ncm_predictions = np.argmax(cm_probabilities, axis=-1)\nprint(\"Correct   labels: \", cm_correct_labels.shape, cm_correct_labels)\nprint(\"Predicted labels: \", cm_predictions.shape, cm_predictions)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:05:36.712678Z","iopub.execute_input":"2022-04-14T10:05:36.713082Z","iopub.status.idle":"2022-04-14T10:05:51.216354Z","shell.execute_reply.started":"2022-04-14T10:05:36.713042Z","shell.execute_reply":"2022-04-14T10:05:51.215556Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"cmat = confusion_matrix(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)))\nscore = f1_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\nprecision = precision_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\nrecall = recall_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\ncmat = (cmat.T / cmat.sum(axis=1)).T # normalized\ndisplay_confusion_matrix(cmat, score, precision, recall)\nprint('f1 score: {:.3f}, precision: {:.3f}, recall: {:.3f}'.format(score, precision, recall))","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:05:51.217854Z","iopub.execute_input":"2022-04-14T10:05:51.218345Z","iopub.status.idle":"2022-04-14T10:05:54.968309Z","shell.execute_reply.started":"2022-04-14T10:05:51.218307Z","shell.execute_reply":"2022-04-14T10:05:54.96761Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"test_ds = get_test_dataset(ordered=True) # since we are splitting the dataset and iterating separately on images and ids, order matters.\n\nprint('Computing predictions...')\ntest_images_ds = test_ds.map(lambda image, idnum: image)\nprobabilities = model.predict(test_images_ds, steps=TEST_STEPS)\npredictions = np.argmax(probabilities, axis=-1)\nprint(predictions)\n\nprint('Generating submission.csv file...')\ntest_ids_ds = test_ds.map(lambda image, idnum: idnum).unbatch()\ntest_ids = next(iter(test_ids_ds.batch(NUM_TEST_IMAGES))).numpy().astype('U') # all in one batch\nnp.savetxt('submission.csv', np.rec.fromarrays([test_ids, predictions]), fmt=['%s', '%d'], delimiter=',', header='id,label', comments='')\n!head submission.csv","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:05:54.969813Z","iopub.execute_input":"2022-04-14T10:05:54.970292Z","iopub.status.idle":"2022-04-14T10:06:15.967526Z","shell.execute_reply.started":"2022-04-14T10:05:54.970254Z","shell.execute_reply":"2022-04-14T10:06:15.966658Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"dataset = get_validation_dataset()\ndataset = dataset.unbatch().batch(20)\nbatch = iter(dataset)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:06:15.970629Z","iopub.execute_input":"2022-04-14T10:06:15.970925Z","iopub.status.idle":"2022-04-14T10:06:16.016584Z","shell.execute_reply.started":"2022-04-14T10:06:15.970887Z","shell.execute_reply":"2022-04-14T10:06:16.015935Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"# run this cell again for next set of images\nimages, labels = next(batch)\nprobabilities = model.predict(tf.cast(images, tf.float32))\npredictions = np.argmax(probabilities, axis=-1)\ndisplay_batch_of_images((images, labels), predictions)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:06:16.017931Z","iopub.execute_input":"2022-04-14T10:06:16.018191Z","iopub.status.idle":"2022-04-14T10:06:22.370132Z","shell.execute_reply.started":"2022-04-14T10:06:16.018157Z","shell.execute_reply":"2022-04-14T10:06:22.367798Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# Xception","metadata":{}},{"cell_type":"code","source":"with strategy.scope():\n    img_adjust_layer = tf.keras.layers.Lambda(lambda data: tf.keras.applications.xception.preprocess_input(tf.cast(data, tf.float32)), input_shape=[*IMAGE_SIZE, 3])\n    pretrained_model = tf.keras.applications.Xception(weights='imagenet', include_top=False)\n    \n    pretrained_model.trainable = False # False = transfer learning, True = fine-tuning\n    \n    model = tf.keras.Sequential([\n        img_adjust_layer,\n        pretrained_model,\n        tf.keras.layers.GlobalAveragePooling2D(),\n        tf.keras.layers.Dense(len(CLASSES), activation='softmax')\n    ])\n        \nmodel.compile(\n    optimizer='adam',\n    loss = 'sparse_categorical_crossentropy',\n    metrics=['sparse_categorical_accuracy'],\n    # NEW on TPU in TensorFlow 24: sending multiple batches to the TPU at once saves communications\n    # overheads and allows the XLA compiler to unroll the loop on TPU and optimize hardware utilization.\n    steps_per_execution=16\n)\nmodel.summary()","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:06:22.371305Z","iopub.execute_input":"2022-04-14T10:06:22.371709Z","iopub.status.idle":"2022-04-14T10:06:25.476918Z","shell.execute_reply.started":"2022-04-14T10:06:22.371676Z","shell.execute_reply":"2022-04-14T10:06:25.476168Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"history = model.fit(get_training_dataset(), steps_per_epoch=STEPS_PER_EPOCH, epochs=EPOCHS,\n                    validation_data=get_validation_dataset(), validation_steps=VALIDATION_STEPS)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:06:25.478127Z","iopub.execute_input":"2022-04-14T10:06:25.478367Z","iopub.status.idle":"2022-04-14T10:14:49.205397Z","shell.execute_reply.started":"2022-04-14T10:06:25.478331Z","shell.execute_reply":"2022-04-14T10:14:49.204625Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"display_training_curves(history.history['loss'], history.history['val_loss'], 'loss', 211)\ndisplay_training_curves(history.history['sparse_categorical_accuracy'], history.history['val_sparse_categorical_accuracy'], 'accuracy', 212)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:14:49.208044Z","iopub.execute_input":"2022-04-14T10:14:49.208293Z","iopub.status.idle":"2022-04-14T10:14:49.625167Z","shell.execute_reply.started":"2022-04-14T10:14:49.208258Z","shell.execute_reply":"2022-04-14T10:14:49.62446Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"cmdataset = get_validation_dataset(ordered=True) # since we are splitting the dataset and iterating separately on images and labels, order matters.\nimages_ds = cmdataset.map(lambda image, label: image)\nlabels_ds = cmdataset.map(lambda image, label: label).unbatch()\ncm_correct_labels = next(iter(labels_ds.batch(NUM_VALIDATION_IMAGES))).numpy() # get everything as one batch\ncm_probabilities = model.predict(images_ds, steps=VALIDATION_STEPS)\ncm_predictions = np.argmax(cm_probabilities, axis=-1)\nprint(\"Correct   labels: \", cm_correct_labels.shape, cm_correct_labels)\nprint(\"Predicted labels: \", cm_predictions.shape, cm_predictions)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:14:49.626351Z","iopub.execute_input":"2022-04-14T10:14:49.626696Z","iopub.status.idle":"2022-04-14T10:15:07.174697Z","shell.execute_reply.started":"2022-04-14T10:14:49.626657Z","shell.execute_reply":"2022-04-14T10:15:07.173953Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"cmat = confusion_matrix(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)))\nscore = f1_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\nprecision = precision_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\nrecall = recall_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\ncmat = (cmat.T / cmat.sum(axis=1)).T # normalized\ndisplay_confusion_matrix(cmat, score, precision, recall)\nprint('f1 score: {:.3f}, precision: {:.3f}, recall: {:.3f}'.format(score, precision, recall))","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:15:07.17611Z","iopub.execute_input":"2022-04-14T10:15:07.17635Z","iopub.status.idle":"2022-04-14T10:15:11.069374Z","shell.execute_reply.started":"2022-04-14T10:15:07.176317Z","shell.execute_reply":"2022-04-14T10:15:11.068718Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"test_ds = get_test_dataset(ordered=True) # since we are splitting the dataset and iterating separately on images and ids, order matters.\n\nprint('Computing predictions...')\ntest_images_ds = test_ds.map(lambda image, idnum: image)\nprobabilities = model.predict(test_images_ds, steps=TEST_STEPS)\npredictions = np.argmax(probabilities, axis=-1)\nprint(predictions)\n\nprint('Generating submission.csv file...')\ntest_ids_ds = test_ds.map(lambda image, idnum: idnum).unbatch()\ntest_ids = next(iter(test_ids_ds.batch(NUM_TEST_IMAGES))).numpy().astype('U') # all in one batch\nnp.savetxt('submission.csv', np.rec.fromarrays([test_ids, predictions]), fmt=['%s', '%d'], delimiter=',', header='id,label', comments='')\n!head submission.csv","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:15:11.070969Z","iopub.execute_input":"2022-04-14T10:15:11.07143Z","iopub.status.idle":"2022-04-14T10:15:42.670017Z","shell.execute_reply.started":"2022-04-14T10:15:11.071389Z","shell.execute_reply":"2022-04-14T10:15:42.669189Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"dataset = get_validation_dataset()\ndataset = dataset.unbatch().batch(20)\nbatch = iter(dataset)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:15:42.672008Z","iopub.execute_input":"2022-04-14T10:15:42.67391Z","iopub.status.idle":"2022-04-14T10:16:37.930361Z","shell.execute_reply.started":"2022-04-14T10:15:42.673864Z","shell.execute_reply":"2022-04-14T10:16:37.929534Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"images, labels = next(batch)\nprobabilities = model.predict(tf.cast(images, tf.float32))\npredictions = np.argmax(probabilities, axis=-1)\ndisplay_batch_of_images((images, labels), predictions)\n","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:16:37.932158Z","iopub.execute_input":"2022-04-14T10:16:37.932397Z","iopub.status.idle":"2022-04-14T10:16:44.026465Z","shell.execute_reply.started":"2022-04-14T10:16:37.932362Z","shell.execute_reply":"2022-04-14T10:16:44.025874Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"markdown","source":"# SWIN Transformer","metadata":{}},{"cell_type":"code","source":"# import shutil\n# shutil.rmtree(\"Swin-Transformer-TF\")\n# !git clone https://github.com/rishigami/Swin-Transformer-TF.git","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:45:36.781034Z","iopub.execute_input":"2022-04-14T10:45:36.781804Z","iopub.status.idle":"2022-04-14T10:45:36.79369Z","shell.execute_reply.started":"2022-04-14T10:45:36.781753Z","shell.execute_reply":"2022-04-14T10:45:36.792902Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"import sys\nsys.path.append('../input/swintransformertf/')\nfrom swintransformer import SwinTransformer","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:53:38.962586Z","iopub.execute_input":"2022-04-14T10:53:38.963192Z","iopub.status.idle":"2022-04-14T10:53:39.011136Z","shell.execute_reply.started":"2022-04-14T10:53:38.963149Z","shell.execute_reply":"2022-04-14T10:53:39.010432Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"with strategy.scope():\n    img_adjust_layer = tf.keras.layers.Lambda(lambda data: tf.keras.applications.imagenet_utils.preprocess_input(tf.cast(data, tf.float32), mode=\"torch\"), input_shape=[*IMAGE_SIZE, 3])\n    pretrained_model = SwinTransformer('swin_large_224', num_classes=len(CLASSES), include_top=False, pretrained=True, use_tpu=True)\n    \n    model = tf.keras.Sequential([\n        img_adjust_layer,\n        pretrained_model,\n        tf.keras.layers.Dense(len(CLASSES), activation='softmax')\n    ])\n        \nmodel.compile(\n    optimizer=tf.keras.optimizers.Adam(learning_rate=1e-5, epsilon=1e-8),\n    loss = 'sparse_categorical_crossentropy',\n    metrics=['sparse_categorical_accuracy']\n)\nmodel.summary()","metadata":{"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"history = model.fit(get_training_dataset(), steps_per_epoch=STEPS_PER_EPOCH, epochs=EPOCHS,\n                    validation_data=get_validation_dataset(), validation_steps=VALIDATION_STEPS)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T10:55:10.74105Z","iopub.execute_input":"2022-04-14T10:55:10.741457Z","iopub.status.idle":"2022-04-14T13:35:54.913614Z","shell.execute_reply.started":"2022-04-14T10:55:10.741418Z","shell.execute_reply":"2022-04-14T13:35:54.912872Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"cmdataset = get_validation_dataset(ordered=True) # since we are splitting the dataset and iterating separately on images and labels, order matters.\nimages_ds = cmdataset.map(lambda image, label: image)\nlabels_ds = cmdataset.map(lambda image, label: label).unbatch()\ncm_correct_labels = next(iter(labels_ds.batch(NUM_VALIDATION_IMAGES))).numpy() # get everything as one batch\ncm_probabilities = model.predict(images_ds, steps=VALIDATION_STEPS)\ncm_predictions = np.argmax(cm_probabilities, axis=-1)\nprint(\"Correct   labels: \", cm_correct_labels.shape, cm_correct_labels)\nprint(\"Predicted labels: \", cm_predictions.shape, cm_predictions)","metadata":{"execution":{"iopub.status.busy":"2022-04-14T13:35:54.916595Z","iopub.execute_input":"2022-04-14T13:35:54.916942Z","iopub.status.idle":"2022-04-14T13:37:22.89653Z","shell.execute_reply.started":"2022-04-14T13:35:54.916902Z","shell.execute_reply":"2022-04-14T13:37:22.895771Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"cmat = confusion_matrix(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)))\nscore = f1_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\nprecision = precision_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\nrecall = recall_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)), average='macro')\ncmat = (cmat.T / cmat.sum(axis=1)).T # normalized\ndisplay_confusion_matrix(cmat, score, precision, recall)\nprint('f1 score: {:.3f}, precision: {:.3f}, recall: {:.3f}'.format(score, precision, recall))","metadata":{"execution":{"iopub.status.busy":"2022-04-14T13:37:22.898556Z","iopub.execute_input":"2022-04-14T13:37:22.899104Z","iopub.status.idle":"2022-04-14T13:37:26.588472Z","shell.execute_reply.started":"2022-04-14T13:37:22.899065Z","shell.execute_reply":"2022-04-14T13:37:26.587791Z"},"trusted":true},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]},{"cell_type":"code","source":"","metadata":{},"execution_count":null,"outputs":[]}]}