![\"\"](\"https://www.googleapis.com/download/storage/v1/b/kaggle-forum-message-attachments/o/inbox%2F10704200%2F3af8764a7f1e25fa3b555c50992a4b0b%2Fpdb.jpg?generation=1735200171237968&alt=media\")
\"pickable_objects\": [
\n {
\n \"name\": \"apo-ferritin\",
\n \"is_particle\": true,
\n \"pdb_id\": \"4V1W\",
\n \"label\": 1,
\n \"color\": [ 0, 117, 220, 128],
\n \"radius\": 60,
\n \"map_threshold\": 0.0418
\n },
I could see these values are different for each type of particle. How do we get pdb_id and radius information for each particle. Any help is highly appreciated.
", "messages": [ { "id": "3071403", "postDate": "12/13/2024 18:26:01", "content": "\"pickable_objects\": [
\n {
\n \"name\": \"apo-ferritin\",
\n \"is_particle\": true,
\n \"pdb_id\": \"4V1W\",
\n \"label\": 1,
\n \"color\": [ 0, 117, 220, 128],
\n \"radius\": 60,
\n \"map_threshold\": 0.0418
\n },
I could see these values are different for each type of particle. How do we get pdb_id and radius information for each particle. Any help is highly appreciated.
", "rawMarkdown": "\"pickable_objects\": [\n {\n \"name\": \"apo-ferritin\",\n \"is_particle\": true,\n \"pdb_id\": \"4V1W\",\n \"label\": 1,\n \"color\": [ 0, 117, 220, 128],\n \"radius\": 60,\n \"map_threshold\": 0.0418\n },\n\nI could see these values are different for each type of particle. How do we get pdb_id and radius information for each particle. Any help is highly appreciated.", "votes": null }, { "id": "3071413", "postDate": "12/13/2024 18:37:40", "content": "I believe most people get it from the BlobDetector (one of the pinned notebooks):
\nhttps://www.kaggle.com/code/kharrington/blobdetector
Thank you @davidlist for the reply. Any idea from where they have got it. Is this something deafult which is derived from the dataset by the competition hosts?
", "rawMarkdown": "Thank you @davidlist for the reply. Any idea from where they have got it. Is this something deafult which is derived from the dataset by the competition hosts?", "votes": null }, { "id": "3073702", "postDate": "12/16/2024 19:25:27", "content": "@kharrington (the author of the notebbook) works at CZII.
", "rawMarkdown": "kharrington (the author of the notebbook) works at CZII.", "votes": null }, { "id": "3077220", "postDate": "12/20/2024 17:31:44", "content": "@shehnaz the PDBs and radius are based on what we know about the particle, and was not derived from the competition data.
", "rawMarkdown": "shehnaz the PDBs and radius are based on what we know about the particle, and was not derived from the competition data.", "votes": null }, { "id": "3081088", "postDate": "12/26/2024 07:34:26", "content": "What does PDB id signify? Should I worry about it?
", "rawMarkdown": "What does PDB id signify? Should I worry about it?", "votes": null }, { "id": "3081098", "postDate": "12/26/2024 08:03:44", "content": "I believe it's Protein Data Bank ID. For instance this is what they have for 4V1W:
\n
And you don't need to worry about it. Name, label, radius, and the fact that it's a particle is all you need for this competition.
", "rawMarkdown": "I believe it's Protein Data Bank ID. For instance this is what they have for 4V1W:\n\n\n\nAnd you don't need to worry about it. Name, label, radius, and the fact that it's a particle is all you need for this competition.", "votes": null } ], "comments": [ { "id": 3071413, "author_name": "davidlist", "author_url": "", "post_date": "12/13/2024 18:37:40", "content": "I believe most people get it from the BlobDetector (one of the pinned notebooks):
\nhttps://www.kaggle.com/code/kharrington/blobdetector
Thank you @davidlist for the reply. Any idea from where they have got it. Is this something deafult which is derived from the dataset by the competition hosts?
", "votes": null, "replies": [ { "id": 3073702, "author_name": "davidlist", "author_url": "", "post_date": "12/16/2024 19:25:27", "content": "@kharrington (the author of the notebbook) works at CZII.
", "votes": null, "replies": [ { "id": 3077220, "author_name": "kharrington", "author_url": "", "post_date": "12/20/2024 17:31:44", "content": "@shehnaz the PDBs and radius are based on what we know about the particle, and was not derived from the competition data.
", "votes": null, "replies": [ { "id": 3081088, "author_name": "vigneshwar472", "author_url": "", "post_date": "12/26/2024 07:34:26", "content": "What does PDB id signify? Should I worry about it?
", "votes": null, "replies": [ { "id": 3081098, "author_name": "davidlist", "author_url": "", "post_date": "12/26/2024 08:03:44", "content": "I believe it's Protein Data Bank ID. For instance this is what they have for 4V1W:
\n
And you don't need to worry about it. Name, label, radius, and the fact that it's a particle is all you need for this competition.
", "votes": null, "replies": [] } ] } ] } ] } ] } ] } ], "raw_markdown_by_id": { "3071403": "\"pickable_objects\": [\n {\n \"name\": \"apo-ferritin\",\n \"is_particle\": true,\n \"pdb_id\": \"4V1W\",\n \"label\": 1,\n \"color\": [ 0, 117, 220, 128],\n \"radius\": 60,\n \"map_threshold\": 0.0418\n },\n\nI could see these values are different for each type of particle. How do we get pdb_id and radius information for each particle. Any help is highly appreciated.", "3071413": "I believe most people get it from the BlobDetector (one of the pinned notebooks):\n[https://www.kaggle.com/code/kharrington/blobdetector](https://www.kaggle.com/code/kharrington/blobdetector)", "3072476": "Thank you @davidlist for the reply. Any idea from where they have got it. Is this something deafult which is derived from the dataset by the competition hosts?", "3073702": "kharrington (the author of the notebbook) works at CZII.", "3077220": "shehnaz the PDBs and radius are based on what we know about the particle, and was not derived from the competition data.", "3081088": "What does PDB id signify? Should I worry about it?", "3081098": "I believe it's Protein Data Bank ID. For instance this is what they have for 4V1W:\n\n\n\nAnd you don't need to worry about it. Name, label, radius, and the fact that it's a particle is all you need for this competition." }, "source": "meta" }