{"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"name":"python","version":"3.10.12","mimetype":"text/x-python","codemirror_mode":{"name":"ipython","version":3},"pygments_lexer":"ipython3","nbconvert_exporter":"python","file_extension":".py"},"kaggle":{"accelerator":"nvidiaTeslaT4","dataSources":[{"sourceId":84969,"databundleVersionId":10033515,"sourceType":"competition"}],"dockerImageVersionId":30823,"isInternetEnabled":true,"language":"python","sourceType":"notebook","isGpuEnabled":true}},"nbformat_minor":4,"nbformat":4,"cells":[{"cell_type":"code","source":"!pip install connected-components-3d==3.21.0 --no-deps --target=/kaggle/working/\nimport cc3d","metadata":{"_uuid":"8f2839f25d086af736a60e9eeb907d3b93b6e0e5","_cell_guid":"b1076dfc-b9ad-4769-8c92-a6c4dae69d19","trusted":true,"execution":{"iopub.status.busy":"2024-12-26T19:10:55.119007Z","iopub.execute_input":"2024-12-26T19:10:55.119314Z","iopub.status.idle":"2024-12-26T19:10:57.420770Z","shell.execute_reply.started":"2024-12-26T19:10:55.119290Z","shell.execute_reply":"2024-12-26T19:10:57.419942Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"!pip install antlr4-python3-runtime==4.9.3 --no-deps --target=/kaggle/working/\n!pip install omegaconf==2.3.0 --no-deps --target=/kaggle/working/\nimport omegaconf","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2024-12-26T19:11:00.324286Z","iopub.execute_input":"2024-12-26T19:11:00.324813Z","iopub.status.idle":"2024-12-26T19:11:04.666531Z","shell.execute_reply.started":"2024-12-26T19:11:00.324786Z","shell.execute_reply":"2024-12-26T19:11:04.665519Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"!pip install cryoet_data_portal==4.0.0 --no-deps --target=/kaggle/working/\n!pip install asciitree==0.3.3 --no-deps --target=/kaggle/working/\n!pip install zarr==2.18.3 --no-deps --target=/kaggle/working/\n!pip install trimesh==4.5.3 --no-deps --target=/kaggle/working/\n!pip install numcodecs==0.13.1 --no-deps --target=/kaggle/working/\n!pip install deepmerge==2.0 --no-deps --target=/kaggle/working/\n!pip install dask==2024.8.0 --no-deps --target=/kaggle/working/\n!pip install ome_zarr==0.10.2 --no-deps --target=/kaggle/working/\n!pip install distinctipy==1.3.4 --no-deps --target=/kaggle/working/\n!pip install fasteners==0.19 --no-deps --target=/kaggle/working/\n!pip install strcase==1.0.0 --no-deps --target=/kaggle/working/\n!pip install backoff==2.2.1 --no-deps --target=/kaggle/working/\n!pip install graphql_core==3.2.5 --no-deps --target=/kaggle/working/\n!pip install requests_toolbelt==1.0.0 --no-deps --target=/kaggle/working/\n!pip install gql==3.5.0 --no-deps --target=/kaggle/working/\n!pip install copick==0.8.0 --no-deps --target=/kaggle/working/\nimport copick","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2024-12-26T19:11:06.332512Z","iopub.execute_input":"2024-12-26T19:11:06.332861Z","iopub.status.idle":"2024-12-26T19:11:31.503220Z","shell.execute_reply.started":"2024-12-26T19:11:06.332832Z","shell.execute_reply":"2024-12-26T19:11:31.502482Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"!pip install git+https://github.com/copick/copick-utils.git --no-deps --target=/kaggle/working/\nfrom copick_utils.segmentation import segmentation_from_picks","metadata":{"trusted":true,"execution":{"execution_failed":"2024-12-26T19:15:06.040Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"!pip install efficientnet-pytorch==0.7.1 --no-deps --target=/kaggle/working/\n!pip install munch==4.0.0 --no-deps --target=/kaggle/working/\n!pip install pretrainedmodels==0.7.4 --no-deps --target=/kaggle/working/\n!pip install timm==0.9.7 --no-deps --target=/kaggle/working/\n!pip install segmentation_models_pytorch==0.3.4 --no-deps --target=/kaggle/working/\nimport segmentation_models_pytorch as smp","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2024-12-26T19:18:13.070770Z","iopub.execute_input":"2024-12-26T19:18:13.071070Z","iopub.status.idle":"2024-12-26T19:18:18.598952Z","shell.execute_reply.started":"2024-12-26T19:18:13.071048Z","shell.execute_reply":"2024-12-26T19:18:18.598103Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"!pip list","metadata":{"trusted":true,"execution":{"iopub.status.busy":"2024-12-26T19:15:47.489526Z","iopub.execute_input":"2024-12-26T19:15:47.489732Z","iopub.status.idle":"2024-12-26T19:15:48.601185Z","shell.execute_reply.started":"2024-12-26T19:15:47.489712Z","shell.execute_reply":"2024-12-26T19:15:48.600389Z"}},"outputs":[],"execution_count":null},{"cell_type":"code","source":"","metadata":{"trusted":true},"outputs":[],"execution_count":null}]}