{"cells":[{"metadata":{"trusted":true},"cell_type":"code","source":"import os\n\nOUTPUT_DIR = './'\nMODEL_DIR = '../input/cassava-resnext50'\nif not os.path.exists(OUTPUT_DIR):\n    os.makedirs(OUTPUT_DIR)\n    \nTRAIN_PATH = '../input/cassava-leaf-disease-classification/train_images'\nTEST_PATH = '../input/cassava-leaf-disease-classification/test_images'","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"class CFG:\n    num_workers = 4\n    model_name = 'resnext50_32x4d'\n    size = 512\n    batch_size = 2\n    seed = 42\n    target_size = 5\n    target_col = 'label'\n    n_fold = 5\n    trn_fold = [0, 1, 2, 3, 4]","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"import sys\nsys.path.append('../input/pytorch-image-models/pytorch-image-models-master')\n\nimport os\nimport math\nimport random\nimport shutil\nfrom pathlib import Path\nfrom contextlib import contextmanager\nfrom collections import defaultdict, Counter\n\nimport scipy as sp\nimport numpy as np\nimport pandas as pd\n\nfrom sklearn import preprocessing\nfrom sklearn.metrics import accuracy_score\nfrom sklearn.model_selection import StratifiedKFold\n\nfrom tqdm.auto import tqdm\nfrom functools import partial\n\nimport cv2\nfrom PIL import Image\n\nimport torch\nimport torch.nn as nn\nimport torch.nn.functional as F\nfrom torch.optim import Adam, SGD\nimport torchvision.models as models\nfrom torch.nn.parameter import Parameter\nfrom torch.utils.data import DataLoader, Dataset\nfrom torch.optim.lr_scheduler import CosineAnnealingWarmRestarts, CosineAnnealingLR, ReduceLROnPlateau\n\nfrom albumentations import (\n    Compose, OneOf, Normalize, Resize, RandomResizedCrop, RandomCrop, HorizontalFlip, VerticalFlip, \n    RandomBrightness, RandomContrast, RandomBrightnessContrast, Rotate, ShiftScaleRotate, Cutout, \n    IAAAdditiveGaussianNoise, Transpose\n    )\nfrom albumentations.pytorch import ToTensorV2\nfrom albumentations import ImageOnlyTransform\n\nimport timm\n\nimport warnings\nwarnings.filterwarnings('ignore')\n\ndevice = torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"def get_score(y_true, y_pred):\n    return accuracy_score(y_true, y_pred)\n\ndef seed_torch(seed=42):\n    random.seed(seed)\n    os.environ['PYTHONHASHSEED'] = str(seed)\n    np.random.seed(seed)\n    torch.manual_seed(seed)\n    torch.cuda.manual_seed(seed)\n    torch.backends.cudnn.deterministic = True\n\nseed_torch(seed=CFG.seed)","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"test = pd.read_csv('../input/cassava-leaf-disease-classification/sample_submission.csv')\ntest.head()","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"class TestDataset(Dataset):\n    def __init__(self, df, transform=None):\n        self.df = df\n        self.file_names = df['image_id'].values\n        self.transform = transform\n        \n    def __len__(self):\n        return len(self.df)\n    \n    def __getitem__(self, idx):\n        file_name = self.file_names[idx]\n        file_path = f'{TEST_PATH}/{file_name}'\n        image = cv2.imread(file_path)\n        image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)\n        if self.transform:\n            augmented = self.transform(image=image)\n            image = augmented['image']\n        return image","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"def get_transforms(*, data):\n    if data == 'train':\n        return Compose([\n            #Resize(CFG.size, CFG.size),\n            Resize(CFG.size, CFG.size),\n            Transpose(p=0.5),\n            HorizontalFlip(p=0.5),\n            VerticalFlip(p=0.5),\n            ShiftScaleRotate(p=0.5),\n            Normalize(\n                mean=[0.485, 0.456, 0.406],\n                std=[0.229, 0.224, 0.225],\n            ),\n            ToTensorV2(),\n        ])\n    \n    elif data == 'valid':\n        return Compose([\n            RandomResizedCrop(CFG.size, CFG.size),\n            Normalize(\n                mean=[0.485, 0.456, 0.406],\n                std=[0.229, 0.224, 0.225],\n            ),\n            ToTensorV2(),\n        ])","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"class CustomResNext(nn.Module):\n    def __init__(self, model_name='resnext50_32x4d', pretrained=False):\n        super().__init__()\n        self.model = timm.create_model(model_name, pretrained=pretrained)\n        n_features = self.model.fc.in_features\n        self.model.fc =  nn.Linear(n_features, CFG.target_size)\n        \n    def forward(self, x):\n        x = self.model(x)\n        return x","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"def load_state(model_path):\n    model = CustomResNext(CFG.model_name, pretrained=False)\n    try:\n        model.load_state_dict(torch.load(model_path)['model'], strict=True)\n        state_dict = torch.load(model_path)['model']\n    except:\n        state_dict = torch.load(model_path)['model']\n        state_dict = {k[7:] if k.startswith('module.') else k: state_dict[k] for k in state_dict.keys()}\n    \n    return state_dict\n\ndef inference(model, states, test_loader, device):\n    model.to(device)\n    tk0 = tqdm(enumerate(test_loader), total=len(test_loader))\n    probs = []\n    for i, (images) in tk0:\n        images = images.to(device)\n        avg_preds = []\n        for state in states:\n            model.load_state_dict(state)\n            model.eval()\n            with torch.no_grad():\n                y_preds = model(images)\n            avg_preds.append(y_preds.softmax(1).to('cpu').numpy())\n        avg_preds = np.mean(avg_preds, axis=0)\n        probs.append(avg_preds)\n    probs = np.concatenate(probs)\n    return probs","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"model = CustomResNext(CFG.model_name, pretrained=False)\nstates = [load_state(MODEL_DIR+f'/data{CFG.model_name}_fold{fold}_best.pth') for fold in CFG.trn_fold]\ntest_dataset = TestDataset(test, transform=get_transforms(data='valid'))\ntest_loader = DataLoader(test_dataset, batch_size=CFG.batch_size, shuffle=False,\n                        num_workers=CFG.num_workers, pin_memory=True)\npredictions = inference(model, states, test_loader, device)\ntest['label'] = predictions.argmax(1)\ntest[['image_id', 'label']].to_csv(OUTPUT_DIR+'submission.csv', index=False)\ntest.head()","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"","execution_count":null,"outputs":[]},{"metadata":{"trusted":true},"cell_type":"code","source":"","execution_count":null,"outputs":[]}],"metadata":{"kernelspec":{"language":"python","display_name":"Python 3","name":"python3"},"language_info":{"pygments_lexer":"ipython3","nbconvert_exporter":"python","version":"3.6.4","file_extension":".py","codemirror_mode":{"name":"ipython","version":3},"name":"python","mimetype":"text/x-python"}},"nbformat":4,"nbformat_minor":4}