{
  "id": 223233,
  "title": "Papers on optical chemical structure recognition",
  "url": "/competitions/bms-molecular-translation/discussion/223233",
  "author_name": "",
  "post_date": "2021-03-03T02:56:08.799067600Z",
  "votes": 22,
  "comment_count": 2,
  "views": 0,
  "content": "<p>Hey everyone!</p>\n<p>I wanted to start a papers thread and build on it, and hope others share as well, papers to gain domain knowledge. I have no domain knowledge in this area so I have downloaded papers that appeared to be relevant after reading their abstracts. I'll be reading these over the coming days and commenting more as I go through all of them. Hope this helps!</p>\n<p><strong>Research Papers:</strong></p>\n<ul>\n<li><p><a href=\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889020/\" target=\"_blank\">Optical Structure Recognition Software To Recover Chemical Information: OSRA — An Open Source Solution</a></p></li>\n<li><p><a href=\"https://dspace.mit.edu/bitstream/handle/1721.1/123132/1128813865-MIT.pdf?sequence=1&amp;isAllowed=y\" target=\"_blank\">A Machine Learning Approach to Molecular Structure Recognition in Chemical Literature</a></p></li>\n<li><p><a href=\"https://deepblue.lib.umich.edu/bitstream/handle/2027.42/87266/Saitou55.pdf?sequence=4\" target=\"_blank\">Image-based Automated Chemical Database Annotation with\nEnsemble of Machine-Vision Classifiers</a></p></li>\n<li><p><a href=\"https://pubs.acs.org/doi/10.1021/ci5002197\" target=\"_blank\">Markov Logic Networks for Optical Chemical Structure Recognition</a> - We introduce a novel approach to this problem based on the pipelined integration of pattern recognition techniques with probabilistic knowledge representation and reasoning.</p></li>\n<li><p><a href=\"https://ieeexplore.ieee.org/document/8978184\" target=\"_blank\">Chemical Structure Recognition (CSR) System: Automatic Analysis of 2D Chemical Structures in Document Images</a></p></li>\n</ul>",
  "messages": [
    {
      "id": "1224738",
      "postDate": "03/03/2021 02:56:08",
      "content": "<p>Hey everyone!</p>\n<p>I wanted to start a papers thread and build on it, and hope others share as well, papers to gain domain knowledge. I have no domain knowledge in this area so I have downloaded papers that appeared to be relevant after reading their abstracts. I'll be reading these over the coming days and commenting more as I go through all of them. Hope this helps!</p>\n<p><strong>Research Papers:</strong></p>\n<ul>\n<li><p><a href=\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889020/\" target=\"_blank\">Optical Structure Recognition Software To Recover Chemical Information: OSRA — An Open Source Solution</a></p></li>\n<li><p><a href=\"https://dspace.mit.edu/bitstream/handle/1721.1/123132/1128813865-MIT.pdf?sequence=1&amp;isAllowed=y\" target=\"_blank\">A Machine Learning Approach to Molecular Structure Recognition in Chemical Literature</a></p></li>\n<li><p><a href=\"https://deepblue.lib.umich.edu/bitstream/handle/2027.42/87266/Saitou55.pdf?sequence=4\" target=\"_blank\">Image-based Automated Chemical Database Annotation with\nEnsemble of Machine-Vision Classifiers</a></p></li>\n<li><p><a href=\"https://pubs.acs.org/doi/10.1021/ci5002197\" target=\"_blank\">Markov Logic Networks for Optical Chemical Structure Recognition</a> - We introduce a novel approach to this problem based on the pipelined integration of pattern recognition techniques with probabilistic knowledge representation and reasoning.</p></li>\n<li><p><a href=\"https://ieeexplore.ieee.org/document/8978184\" target=\"_blank\">Chemical Structure Recognition (CSR) System: Automatic Analysis of 2D Chemical Structures in Document Images</a></p></li>\n</ul>",
      "rawMarkdown": "Hey everyone!\n\nI wanted to start a papers thread and build on it, and hope others share as well, papers to gain domain knowledge. I have no domain knowledge in this area so I have downloaded papers that appeared to be relevant after reading their abstracts. I'll be reading these over the coming days and commenting more as I go through all of them. Hope this helps!\n\n**Research Papers:**\n\n* [Optical Structure Recognition Software To Recover Chemical Information: OSRA — An Open Source Solution](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889020/)\n\n* [A Machine Learning Approach to Molecular Structure Recognition in Chemical Literature](https://dspace.mit.edu/bitstream/handle/1721.1/123132/1128813865-MIT.pdf?sequence=1&isAllowed=y)\n\n* [Image-based Automated Chemical Database Annotation with\nEnsemble of Machine-Vision Classifiers](https://deepblue.lib.umich.edu/bitstream/handle/2027.42/87266/Saitou55.pdf?sequence=4)\n\n* [Markov Logic Networks for Optical Chemical Structure Recognition](https://pubs.acs.org/doi/10.1021/ci5002197) - We introduce a novel approach to this problem based on the pipelined integration of pattern recognition techniques with probabilistic knowledge representation and reasoning.\n\n* [Chemical Structure Recognition (CSR) System: Automatic Analysis of 2D Chemical Structures in Document Images](https://ieeexplore.ieee.org/document/8978184)",
      "votes": null
    },
    {
      "id": "1225220",
      "postDate": "03/03/2021 12:46:37",
      "content": "<p>Here is a link to a recent review I found dealing with different approaches to accomplish this.</p>\n<p><a href=\"https://jcheminf.biomedcentral.com/articles/10.1186/s13321-020-00465-0\" target=\"_blank\">https://jcheminf.biomedcentral.com/articles/10.1186/s13321-020-00465-0</a></p>",
      "rawMarkdown": "Here is a link to a recent review I found dealing with different approaches to accomplish this.\n\nhttps://jcheminf.biomedcentral.com/articles/10.1186/s13321-020-00465-0",
      "votes": null
    },
    {
      "id": "1244381",
      "postDate": "03/19/2021 00:31:27",
      "content": "<p><a href=\"https://www.kaggle.com/nstevens96\" target=\"_blank\">@nstevens96</a> that's a good one!</p>",
      "rawMarkdown": "nstevens96 that's a good one!",
      "votes": null
    }
  ],
  "comments": [
    {
      "id": 1225220,
      "author_name": "nstevens96",
      "author_url": "",
      "post_date": "03/03/2021 12:46:37",
      "content": "<p>Here is a link to a recent review I found dealing with different approaches to accomplish this.</p>\n<p><a href=\"https://jcheminf.biomedcentral.com/articles/10.1186/s13321-020-00465-0\" target=\"_blank\">https://jcheminf.biomedcentral.com/articles/10.1186/s13321-020-00465-0</a></p>",
      "votes": null,
      "replies": [
        {
          "id": 1244381,
          "author_name": "crained",
          "author_url": "",
          "post_date": "03/19/2021 00:31:27",
          "content": "<p><a href=\"https://www.kaggle.com/nstevens96\" target=\"_blank\">@nstevens96</a> that's a good one!</p>",
          "votes": null,
          "replies": []
        }
      ]
    }
  ],
  "raw_markdown_by_id": {
    "1224738": "Hey everyone!\n\nI wanted to start a papers thread and build on it, and hope others share as well, papers to gain domain knowledge. I have no domain knowledge in this area so I have downloaded papers that appeared to be relevant after reading their abstracts. I'll be reading these over the coming days and commenting more as I go through all of them. Hope this helps!\n\n**Research Papers:**\n\n* [Optical Structure Recognition Software To Recover Chemical Information: OSRA — An Open Source Solution](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889020/)\n\n* [A Machine Learning Approach to Molecular Structure Recognition in Chemical Literature](https://dspace.mit.edu/bitstream/handle/1721.1/123132/1128813865-MIT.pdf?sequence=1&isAllowed=y)\n\n* [Image-based Automated Chemical Database Annotation with\nEnsemble of Machine-Vision Classifiers](https://deepblue.lib.umich.edu/bitstream/handle/2027.42/87266/Saitou55.pdf?sequence=4)\n\n* [Markov Logic Networks for Optical Chemical Structure Recognition](https://pubs.acs.org/doi/10.1021/ci5002197) - We introduce a novel approach to this problem based on the pipelined integration of pattern recognition techniques with probabilistic knowledge representation and reasoning.\n\n* [Chemical Structure Recognition (CSR) System: Automatic Analysis of 2D Chemical Structures in Document Images](https://ieeexplore.ieee.org/document/8978184)",
    "1225220": "Here is a link to a recent review I found dealing with different approaches to accomplish this.\n\nhttps://jcheminf.biomedcentral.com/articles/10.1186/s13321-020-00465-0",
    "1244381": "nstevens96 that's a good one!"
  },
  "source": "meta"
}